Материалы:NC 008027
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LOCUS NC_008027 5888780 bp DNA circular BCT 14-SEP-2007 DEFINITION Pseudomonas entomophila L48, complete genome. ACCESSION NC_008027 VERSION NC_008027.1 GI:104779316 KEYWORDS . SOURCE Pseudomonas entomophila L48 ORGANISM Pseudomonas entomophila L48 Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. REFERENCE 1 (bases 1 to 5888780) AUTHORS Vodovar,N., Vallenet,D., Cruveiller,S., Rouy,Z., Barbe,V., Acosta,C., Cattolico,L., Jubin,C., Lajus,A., Segurens,B., Vacherie,B., Wincker,P., Weissenbach,J., Lemaitre,B., Medigue,C. and Boccard,F. TITLE Complete genome sequence of the entomopathogenic and metabolically versatile soil bacterium Pseudomonas entomophila JOURNAL Nat. Biotechnol. 24 (6), 673-679 (2006) PUBMED 16699499 REFERENCE 2 (bases 1 to 5888780) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (16-MAY-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 5888780) AUTHORS Genoscope. TITLE Direct Submission JOURNAL Submitted (27-JAN-2006) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr) COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from CT573326. COMPLETENESS: full length.
Расположение РНК
[править]Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
---|---|---|---|---|---|---|---|
115507 | 117024 | + | 1518 | 104779316 | PSEEN_16s_3 | - | ribosomal RNA 16s |
117106 | 117182 | + | 77 | 104779316 | PSEENtRNA1 | - | 14 Ile tRNA |
117189 | 117264 | + | 76 | 104779316 | PSEENtRNA2 | - | 02 Ala tRNA |
117510 | 120411 | + | 2902 | 104779316 | PSEEN_23s_3 | - | ribosomal RNA 23s |
120536 | 120655 | + | 120 | 104779316 | PSEEN_5s_3 | - | ribosomal RNA 5s |
120761 | 120880 | + | 120 | 104779316 | PSEEN_5s_4 | - | ribosomal RNA 5s |
180363 | 180439 | - | 77 | 104779316 | PSEENtRNA78 | - | 11 Arg tRNA |
431613 | 431689 | - | 77 | 104779316 | PSEENtRNA77 | - | 16 Met tRNA |
490048 | 491565 | + | 1518 | 104779316 | PSEEN_16s_4 | - | ribosomal RNA 16s |
491647 | 491723 | + | 77 | 104779316 | PSEENtRNA3 | - | 14 Ile tRNA |
491730 | 491805 | + | 76 | 104779316 | PSEENtRNA4 | - | 02 Ala tRNA |
492051 | 494952 | + | 2902 | 104779316 | PSEEN_23s_4 | - | ribosomal RNA 23s |
495075 | 495194 | + | 120 | 104779316 | PSEEN_5s_5 | - | ribosomal RNA 5s |
497718 | 497801 | + | 84 | 104779316 | PSEENtRNA5 | - | 18 Tyr tRNA |
497826 | 497899 | + | 74 | 104779316 | PSEENtRNA6 | - | 01 Gly tRNA |
497928 | 498003 | + | 76 | 104779316 | PSEENtRNA7 | - | 12 Thr tRNA |
499331 | 499406 | + | 76 | 104779316 | PSEENtRNA8 | - | 20 Trp tRNA |
585849 | 585944 | + | 96 | 104779316 | PSEENtRNA9 | - | Sec tRNA |
696516 | 698033 | + | 1518 | 104779316 | PSEEN_16s_5 | - | ribosomal RNA 16s |
698115 | 698191 | + | 77 | 104779316 | PSEENtRNA10 | - | 14 Ile tRNA |
698198 | 698273 | + | 76 | 104779316 | PSEENtRNA11 | - | 02 Ala tRNA |
698519 | 701421 | + | 2903 | 104779316 | PSEEN_23s_5 | - | ribosomal RNA 23s |
701544 | 701663 | + | 120 | 104779316 | PSEEN_5s_6 | - | ribosomal RNA 5s |
791375 | 791766 | - | 392 | 104779316 | PSEENmisc_RNA791375R | - | tmRNA involved in trans-translation |
822290 | 822375 | + | 86 | 104779316 | PSEENtRNA12 | - | 15 Leu tRNA |
822475 | 822551 | + | 77 | 104779316 | PSEENtRNA13 | - | 16 Met tRNA |
872404 | 872480 | - | 77 | 104779316 | PSEENtRNA76 | - | 16 Met tRNA |
892253 | 892327 | - | 75 | 104779316 | PSEENtRNA75 | - | 05 Gln tRNA |
1052156 | 1052240 | - | 85 | 104779316 | PSEENtRNA74 | - | 15 Leu tRNA |
1375561 | 1377078 | + | 1518 | 104779316 | PSEEN_16s_6 | - | ribosomal RNA 16s |
1377160 | 1377236 | + | 77 | 104779316 | PSEENtRNA14 | - | 14 Ile tRNA |
1377243 | 1377318 | + | 76 | 104779316 | PSEENtRNA15 | - | 02 Ala tRNA |
1377564 | 1380465 | + | 2902 | 104779316 | PSEEN_23s_6 | - | ribosomal RNA 23s |
1380588 | 1380707 | + | 120 | 104779316 | PSEEN_5s_7 | - | ribosomal RNA 5s |
1472196 | 1472271 | + | 76 | 104779316 | PSEENtRNA16 | - | 13 Val tRNA |
1472285 | 1472361 | + | 77 | 104779316 | PSEENtRNA17 | - | 06 Asp tRNA |
1616236 | 1616325 | + | 90 | 104779316 | PSEENtRNA18 | - | 08 Ser tRNA |
1660302 | 1660377 | + | 76 | 104779316 | PSEENtRNA19 | - | 04 Glu tRNA |
1660380 | 1660455 | + | 76 | 104779316 | PSEENtRNA20 | - | 01 Gly tRNA |
1660548 | 1660623 | + | 76 | 104779316 | PSEENtRNA21 | - | 04 Glu tRNA |
1660627 | 1660702 | + | 76 | 104779316 | PSEENtRNA22 | - | 01 Gly tRNA |
1660785 | 1660860 | + | 76 | 104779316 | PSEENtRNA23 | - | 01 Gly tRNA |
1700426 | 1700501 | - | 76 | 104779316 | PSEENtRNA73 | - | 07 Asn tRNA |
1708730 | 1708805 | + | 76 | 104779316 | PSEENtRNA24 | - | 02 Ala tRNA |
1708878 | 1708953 | + | 76 | 104779316 | PSEENtRNA25 | - | 04 Glu tRNA |
1709006 | 1709081 | + | 76 | 104779316 | PSEENtRNA26 | - | 02 Ala tRNA |
1709124 | 1709199 | + | 76 | 104779316 | PSEENtRNA27 | - | 04 Glu tRNA |
1709266 | 1709341 | + | 76 | 104779316 | PSEENtRNA28 | - | 02 Ala tRNA |
1709384 | 1709459 | + | 76 | 104779316 | PSEENtRNA29 | - | 04 Glu tRNA |
1767502 | 1767577 | + | 76 | 104779316 | PSEENtRNA30 | - | 13 Val tRNA |
1767659 | 1767735 | + | 77 | 104779316 | PSEENtRNA31 | - | 06 Asp tRNA |
1767818 | 1767894 | + | 77 | 104779316 | PSEENtRNA32 | - | 06 Asp tRNA |
1768034 | 1768110 | + | 77 | 104779316 | PSEENtRNA33 | - | 06 Asp tRNA |
1854972 | 1855084 | + | 113 | 104779316 | PSEENmisc_RNA1854972D | - | mature 4.5S RN |
1952643 | 1952719 | + | 77 | 104779316 | PSEENtRNA34 | - | 11 Arg tRNA |
1952755 | 1952830 | + | 76 | 104779316 | PSEENtRNA35 | - | 09 His tRNA |
1952887 | 1952971 | + | 85 | 104779316 | PSEENtRNA36 | - | 15 Leu tRNA |
1953008 | 1953083 | + | 76 | 104779316 | PSEENtRNA37 | - | 09 His tRNA |
2054946 | 2055022 | + | 77 | 104779316 | PSEENtRNA38 | - | 03 Pro tRNA |
2275429 | 2275505 | + | 77 | 104779316 | PSEENtRNA39 | - | 13 Val tRNA |
2275839 | 2275915 | + | 77 | 104779316 | PSEENtRNA40 | - | 13 Val tRNA |
2337548 | 2337635 | + | 88 | 104779316 | PSEENtRNA41 | - | 08 Ser tRNA |
2367754 | 2367827 | + | 74 | 104779316 | PSEENtRNA42 | - | 19 Cys tRNA |
2370221 | 2370305 | - | 85 | 104779316 | PSEENtRNA72 | - | 15 Leu tRNA |
2739329 | 2740846 | + | 1518 | 104779316 | PSEEN_16s_7 | - | ribosomal RNA 16s |
2740928 | 2741004 | + | 77 | 104779316 | PSEENtRNA43 | - | 14 Ile tRNA |
2741011 | 2741086 | + | 76 | 104779316 | PSEENtRNA44 | - | 02 Ala tRNA |
2741332 | 2744233 | + | 2902 | 104779316 | PSEEN_23s_7 | - | ribosomal RNA 23s |
2744356 | 2744475 | + | 120 | 104779316 | PSEEN_5s_8 | - | ribosomal RNA 5s |
3656603 | 3656753 | + | 151 | 104779316 | PSEENmisc_RNA3656603D | - | regulatory RNA PrrF1 |
3670673 | 3670747 | - | 75 | 104779316 | PSEENtRNA71 | - | 05 Gln tRNA |
3722568 | 3722643 | - | 76 | 104779316 | PSEENtRNA70 | - | 01 Gly tRNA |
3795513 | 3795632 | - | 120 | 104779316 | PSEEN_5s_2 | - | ribosomal RNA 5s |
3795755 | 3798656 | - | 2902 | 104779316 | PSEEN_23s_2 | - | ribosomal RNA 23s |
3798902 | 3798977 | - | 76 | 104779316 | PSEENtRNA69 | - | 02 Ala tRNA |
3798984 | 3799060 | - | 77 | 104779316 | PSEENtRNA68 | - | 14 Ile tRNA |
3799142 | 3800659 | - | 1518 | 104779316 | PSEEN_16s_2 | - | ribosomal RNA 16s |
4024934 | 4025010 | + | 77 | 104779316 | PSEENtRNA45 | - | 03 Pro tRNA |
4152602 | 4152678 | - | 77 | 104779316 | PSEENtRNA67 | - | 11 Arg tRNA |
4156158 | 4156234 | - | 77 | 104779316 | PSEENtRNA66 | - | 11 Arg tRNA |
4156304 | 4156380 | - | 77 | 104779316 | PSEENtRNA65 | - | 11 Arg tRNA |
4156451 | 4156527 | - | 77 | 104779316 | PSEENtRNA64 | - | 11 Arg tRNA |
4156598 | 4156674 | - | 77 | 104779316 | PSEENtRNA63 | - | 11 Arg tRNA |
4156741 | 4156831 | - | 91 | 104779316 | PSEENtRNA62 | - | 08 Ser tRNA |
4357182 | 4357271 | - | 90 | 104779316 | PSEENtRNA61 | - | 08 Ser tRNA |
4381324 | 4381399 | - | 76 | 104779316 | PSEENtRNA60 | - | 10 Lys tRNA |
4402622 | 4402698 | + | 77 | 104779316 | PSEENtRNA46 | - | 16 Met tRNA |
4402830 | 4402906 | + | 77 | 104779316 | PSEENtRNA47 | - | 16 Met tRNA |
4403039 | 4403115 | + | 77 | 104779316 | PSEENtRNA48 | - | 16 Met tRNA |
4468721 | 4468852 | - | 132 | 104779316 | PSEENmisc_RNA4468721R | - | small regulatory RNA rsmZ |
4608564 | 4608637 | + | 74 | 104779316 | PSEENtRNA49 | - | 01 Gly tRNA |
4810184 | 4810543 | - | 360 | 104779316 | PSEENmisc_RNA4810200R | - | RNA component of RNAseP (ribozyme) |
4967960 | 4968035 | - | 76 | 104779316 | PSEENtRNA59 | - | 12 Thr tRNA |
4976158 | 4976233 | - | 76 | 104779316 | PSEENtRNA58 | - | 10 Lys tRNA |
4976240 | 4976316 | - | 77 | 104779316 | PSEENtRNA57 | - | 03 Pro tRNA |
4976321 | 4976396 | - | 76 | 104779316 | PSEENtRNA56 | - | 07 Asn tRNA |
4998500 | 4998619 | - | 120 | 104779316 | PSEEN_5s_1 | - | ribosomal RNA 5s |
4998744 | 5001645 | - | 2902 | 104779316 | PSEEN_23s_1 | - | ribosomal RNA 23s |
5001891 | 5001966 | - | 76 | 104779316 | PSEENtRNA55 | - | 02 Ala tRNA |
5001991 | 5002067 | - | 77 | 104779316 | PSEENtRNA54 | - | 14 Ile tRNA |
5002158 | 5003675 | - | 1518 | 104779316 | PSEEN_16s_1 | - | ribosomal RNA 16s |
5016966 | 5017114 | + | 149 | 104779316 | PSEENmisc_RNA5016966D | - | regulatory RNA PrrF2 |
5236127 | 5236213 | + | 87 | 104779316 | PSEENtRNA50 | - | 15 Leu tRNA |
5236301 | 5236387 | + | 87 | 104779316 | PSEENtRNA51 | - | 15 Leu tRNA |
5427050 | 5427174 | - | 125 | 104779316 | PSEENmisc_RNA5427050R | - | rsmY regulatory RNA |
5528261 | 5528336 | + | 76 | 104779316 | PSEENtRNA52 | - | 17 Phe tRNA |
5540601 | 5540676 | + | 76 | 104779316 | PSEENtRNA53 | - | 12 Thr tRNA |