Материалы:NC 008027

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008027            5888780 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Pseudomonas entomophila L48, complete genome.
   ACCESSION   NC_008027
   VERSION     NC_008027.1  GI:104779316
   KEYWORDS    .
   SOURCE      Pseudomonas entomophila L48
     ORGANISM  Pseudomonas entomophila L48
               Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
               Pseudomonadaceae; Pseudomonas.
   REFERENCE   1  (bases 1 to 5888780)
     AUTHORS   Vodovar,N., Vallenet,D., Cruveiller,S., Rouy,Z., Barbe,V.,
               Acosta,C., Cattolico,L., Jubin,C., Lajus,A., Segurens,B.,
               Vacherie,B., Wincker,P., Weissenbach,J., Lemaitre,B., Medigue,C.
               and Boccard,F.
     TITLE     Complete genome sequence of the entomopathogenic and metabolically
               versatile soil bacterium Pseudomonas entomophila
     JOURNAL   Nat. Biotechnol. 24 (6), 673-679 (2006)
      PUBMED   16699499
   REFERENCE   2  (bases 1 to 5888780)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (16-MAY-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 5888780)
     AUTHORS   Genoscope.
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JAN-2006) Genoscope - Centre National de Sequencage :
               BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr
               - Web : www.genoscope.cns.fr)
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CT573326.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
115507	117024	+	1518	104779316	PSEEN_16s_3	-	ribosomal RNA 16s
117106	117182	+	77	104779316	PSEENtRNA1	-	^{14 Ile tRNA}
117189	117264	+	76	104779316	PSEENtRNA2	-	^{02 Ala tRNA}
117510	120411	+	2902	104779316	PSEEN_23s_3	-	ribosomal RNA 23s
120536	120655	+	120	104779316	PSEEN_5s_3	-	ribosomal RNA 5s
120761	120880	+	120	104779316	PSEEN_5s_4	-	ribosomal RNA 5s
180363	180439	-	77	104779316	PSEENtRNA78	-	^{11 Arg tRNA}
431613	431689	-	77	104779316	PSEENtRNA77	-	^{16 Met tRNA}
490048	491565	+	1518	104779316	PSEEN_16s_4	-	ribosomal RNA 16s
491647	491723	+	77	104779316	PSEENtRNA3	-	^{14 Ile tRNA}
491730	491805	+	76	104779316	PSEENtRNA4	-	^{02 Ala tRNA}
492051	494952	+	2902	104779316	PSEEN_23s_4	-	ribosomal RNA 23s
495075	495194	+	120	104779316	PSEEN_5s_5	-	ribosomal RNA 5s
497718	497801	+	84	104779316	PSEENtRNA5	-	^{18 Tyr tRNA}
497826	497899	+	74	104779316	PSEENtRNA6	-	^{01 Gly tRNA}
497928	498003	+	76	104779316	PSEENtRNA7	-	^{12 Thr tRNA}
499331	499406	+	76	104779316	PSEENtRNA8	-	^{20 Trp tRNA}
585849	585944	+	96	104779316	PSEENtRNA9	-	Sec tRNA
696516	698033	+	1518	104779316	PSEEN_16s_5	-	ribosomal RNA 16s
698115	698191	+	77	104779316	PSEENtRNA10	-	^{14 Ile tRNA}
698198	698273	+	76	104779316	PSEENtRNA11	-	^{02 Ala tRNA}
698519	701421	+	2903	104779316	PSEEN_23s_5	-	ribosomal RNA 23s
701544	701663	+	120	104779316	PSEEN_5s_6	-	ribosomal RNA 5s
791375	791766	-	392	104779316	PSEENmisc_RNA791375R	-	tmRNA involved in trans-translation
822290	822375	+	86	104779316	PSEENtRNA12	-	^{15 Leu tRNA}
822475	822551	+	77	104779316	PSEENtRNA13	-	^{16 Met tRNA}
872404	872480	-	77	104779316	PSEENtRNA76	-	^{16 Met tRNA}
892253	892327	-	75	104779316	PSEENtRNA75	-	^{05 Gln tRNA}
1052156	1052240	-	85	104779316	PSEENtRNA74	-	^{15 Leu tRNA}
1375561	1377078	+	1518	104779316	PSEEN_16s_6	-	ribosomal RNA 16s
1377160	1377236	+	77	104779316	PSEENtRNA14	-	^{14 Ile tRNA}
1377243	1377318	+	76	104779316	PSEENtRNA15	-	^{02 Ala tRNA}
1377564	1380465	+	2902	104779316	PSEEN_23s_6	-	ribosomal RNA 23s
1380588	1380707	+	120	104779316	PSEEN_5s_7	-	ribosomal RNA 5s
1472196	1472271	+	76	104779316	PSEENtRNA16	-	^{13 Val tRNA}
1472285	1472361	+	77	104779316	PSEENtRNA17	-	^{06 Asp tRNA}
1616236	1616325	+	90	104779316	PSEENtRNA18	-	^{08 Ser tRNA}
1660302	1660377	+	76	104779316	PSEENtRNA19	-	^{04 Glu tRNA}
1660380	1660455	+	76	104779316	PSEENtRNA20	-	^{01 Gly tRNA}
1660548	1660623	+	76	104779316	PSEENtRNA21	-	^{04 Glu tRNA}
1660627	1660702	+	76	104779316	PSEENtRNA22	-	^{01 Gly tRNA}
1660785	1660860	+	76	104779316	PSEENtRNA23	-	^{01 Gly tRNA}
1700426	1700501	-	76	104779316	PSEENtRNA73	-	^{07 Asn tRNA}
1708730	1708805	+	76	104779316	PSEENtRNA24	-	^{02 Ala tRNA}
1708878	1708953	+	76	104779316	PSEENtRNA25	-	^{04 Glu tRNA}
1709006	1709081	+	76	104779316	PSEENtRNA26	-	^{02 Ala tRNA}
1709124	1709199	+	76	104779316	PSEENtRNA27	-	^{04 Glu tRNA}
1709266	1709341	+	76	104779316	PSEENtRNA28	-	^{02 Ala tRNA}
1709384	1709459	+	76	104779316	PSEENtRNA29	-	^{04 Glu tRNA}
1767502	1767577	+	76	104779316	PSEENtRNA30	-	^{13 Val tRNA}
1767659	1767735	+	77	104779316	PSEENtRNA31	-	^{06 Asp tRNA}
1767818	1767894	+	77	104779316	PSEENtRNA32	-	^{06 Asp tRNA}
1768034	1768110	+	77	104779316	PSEENtRNA33	-	^{06 Asp tRNA}
1854972	1855084	+	113	104779316	PSEENmisc_RNA1854972D	-	mature 4.5S RN
1952643	1952719	+	77	104779316	PSEENtRNA34	-	^{11 Arg tRNA}
1952755	1952830	+	76	104779316	PSEENtRNA35	-	^{09 His tRNA}
1952887	1952971	+	85	104779316	PSEENtRNA36	-	^{15 Leu tRNA}
1953008	1953083	+	76	104779316	PSEENtRNA37	-	^{09 His tRNA}
2054946	2055022	+	77	104779316	PSEENtRNA38	-	^{03 Pro tRNA}
2275429	2275505	+	77	104779316	PSEENtRNA39	-	^{13 Val tRNA}
2275839	2275915	+	77	104779316	PSEENtRNA40	-	^{13 Val tRNA}
2337548	2337635	+	88	104779316	PSEENtRNA41	-	^{08 Ser tRNA}
2367754	2367827	+	74	104779316	PSEENtRNA42	-	^{19 Cys tRNA}
2370221	2370305	-	85	104779316	PSEENtRNA72	-	^{15 Leu tRNA}
2739329	2740846	+	1518	104779316	PSEEN_16s_7	-	ribosomal RNA 16s
2740928	2741004	+	77	104779316	PSEENtRNA43	-	^{14 Ile tRNA}
2741011	2741086	+	76	104779316	PSEENtRNA44	-	^{02 Ala tRNA}
2741332	2744233	+	2902	104779316	PSEEN_23s_7	-	ribosomal RNA 23s
2744356	2744475	+	120	104779316	PSEEN_5s_8	-	ribosomal RNA 5s
3656603	3656753	+	151	104779316	PSEENmisc_RNA3656603D	-	regulatory RNA PrrF1
3670673	3670747	-	75	104779316	PSEENtRNA71	-	^{05 Gln tRNA}
3722568	3722643	-	76	104779316	PSEENtRNA70	-	^{01 Gly tRNA}
3795513	3795632	-	120	104779316	PSEEN_5s_2	-	ribosomal RNA 5s
3795755	3798656	-	2902	104779316	PSEEN_23s_2	-	ribosomal RNA 23s
3798902	3798977	-	76	104779316	PSEENtRNA69	-	^{02 Ala tRNA}
3798984	3799060	-	77	104779316	PSEENtRNA68	-	^{14 Ile tRNA}
3799142	3800659	-	1518	104779316	PSEEN_16s_2	-	ribosomal RNA 16s
4024934	4025010	+	77	104779316	PSEENtRNA45	-	^{03 Pro tRNA}
4152602	4152678	-	77	104779316	PSEENtRNA67	-	^{11 Arg tRNA}
4156158	4156234	-	77	104779316	PSEENtRNA66	-	^{11 Arg tRNA}
4156304	4156380	-	77	104779316	PSEENtRNA65	-	^{11 Arg tRNA}
4156451	4156527	-	77	104779316	PSEENtRNA64	-	^{11 Arg tRNA}
4156598	4156674	-	77	104779316	PSEENtRNA63	-	^{11 Arg tRNA}
4156741	4156831	-	91	104779316	PSEENtRNA62	-	^{08 Ser tRNA}
4357182	4357271	-	90	104779316	PSEENtRNA61	-	^{08 Ser tRNA}
4381324	4381399	-	76	104779316	PSEENtRNA60	-	^{10 Lys tRNA}
4402622	4402698	+	77	104779316	PSEENtRNA46	-	^{16 Met tRNA}
4402830	4402906	+	77	104779316	PSEENtRNA47	-	^{16 Met tRNA}
4403039	4403115	+	77	104779316	PSEENtRNA48	-	^{16 Met tRNA}
4468721	4468852	-	132	104779316	PSEENmisc_RNA4468721R	-	small regulatory RNA rsmZ
4608564	4608637	+	74	104779316	PSEENtRNA49	-	^{01 Gly tRNA}
4810184	4810543	-	360	104779316	PSEENmisc_RNA4810200R	-	RNA component of RNAseP (ribozyme)
4967960	4968035	-	76	104779316	PSEENtRNA59	-	^{12 Thr tRNA}
4976158	4976233	-	76	104779316	PSEENtRNA58	-	^{10 Lys tRNA}
4976240	4976316	-	77	104779316	PSEENtRNA57	-	^{03 Pro tRNA}
4976321	4976396	-	76	104779316	PSEENtRNA56	-	^{07 Asn tRNA}
4998500	4998619	-	120	104779316	PSEEN_5s_1	-	ribosomal RNA 5s
4998744	5001645	-	2902	104779316	PSEEN_23s_1	-	ribosomal RNA 23s
5001891	5001966	-	76	104779316	PSEENtRNA55	-	^{02 Ala tRNA}
5001991	5002067	-	77	104779316	PSEENtRNA54	-	^{14 Ile tRNA}
5002158	5003675	-	1518	104779316	PSEEN_16s_1	-	ribosomal RNA 16s
5016966	5017114	+	149	104779316	PSEENmisc_RNA5016966D	-	regulatory RNA PrrF2
5236127	5236213	+	87	104779316	PSEENtRNA50	-	^{15 Leu tRNA}
5236301	5236387	+	87	104779316	PSEENtRNA51	-	^{15 Leu tRNA}
5427050	5427174	-	125	104779316	PSEENmisc_RNA5427050R	-	rsmY regulatory RNA
5528261	5528336	+	76	104779316	PSEENtRNA52	-	^{17 Phe tRNA}
5540601	5540676	+	76	104779316	PSEENtRNA53	-	^{12 Thr tRNA}