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Материалы:NC 008149

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   LOCUS       NC_008149            4534590 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Yersinia pestis Nepal516, complete genome.
   ACCESSION   NC_008149
   VERSION     NC_008149.1  GI:108810166
   KEYWORDS    .
   SOURCE      Yersinia pestis Nepal516
     ORGANISM  Yersinia pestis Nepal516
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4534590)
     AUTHORS   Chain,P.S., Hu,P., Malfatti,S.A., Radnedge,L., Larimer,F.,
               Vergez,L.M., Worsham,P., Chu,M.C. and Andersen,G.L.
     TITLE     Complete Genome Sequence of Yersinia pestis Strains Antiqua and
               Nepal516: Evidence of Gene Reduction in an Emerging Pathogen
     JOURNAL   J. Bacteriol. 188 (12), 4453-4463 (2006)
      PUBMED   16740952
   REFERENCE   2  (bases 1 to 4534590)
     AUTHORS   Barry,K., Lucas,S., Lapidus,A., Copeland,A., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F.,
               Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Yersinia pestis Nepal516
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 4534590)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 4534590)
     AUTHORS   Barry,K., Lucas,S., Lapidus,A., Copeland,A., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F.,
               Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000305.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773192
               Source DNA and bacteria available from Gary Andersen
               (glandersen@lbl.gov)
               Contacts: Gary Andersen (glandersen@lbl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by JGI-ORNL
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
12264 13808 + 1545 108810166 YPN_r001 - 16S ribosomal RNA
13943 14018 + 76 108810166 YPN_r002 - 04 Glu tRNA
14271 17177 + 2907 108810166 YPN_r003 - 23S ribosomal RNA
17285 17404 + 120 108810166 YPN_r004 - 5S ribosomal RNA
17418 17493 + 76 108810166 YPN_r005 - 12 Thr tRNA
17532 17651 + 120 108810166 YPN_r005a - 5S ribosomal RNA
80501 80761 + 261 108810166 YPN_r006 - cobalamin riboswitch
83991 85533 + 1543 108810166 YPN_r007 - 16S ribosomal RNA
85670 85745 + 76 108810166 YPN_r008 - 04 Glu tRNA
85998 88904 + 2907 108810166 YPN_r009 - 23S ribosomal RNA
89012 89131 + 120 108810166 YPN_r010 - 5S ribosomal RNA
89255 89331 + 77 108810166 YPN_r011 - 06 Asp tRNA
89340 89415 + 76 108810166 YPN_r012 - 20 Trp tRNA
147974 148050 + 77 108810166 YPN_r013 - 11 Arg tRNA
148134 148209 + 76 108810166 YPN_r014 - 09 His tRNA
148226 148312 + 87 108810166 YPN_r015 - 15 Leu tRNA
148388 148464 + 77 108810166 YPN_r016 - 03 Pro tRNA
250375 251917 + 1543 108810166 YPN_r017 - 16S ribosomal RNA
252020 252096 + 77 108810166 YPN_r018 - 14 Ile tRNA
252148 252223 + 76 108810166 YPN_r019 - 02 Ala tRNA
252442 255348 + 2907 108810166 YPN_r020 - 23S ribosomal RNA
255447 255575 + 129 108810166 YPN_r021 - 5S ribosomal RNA
262132 262207 + 76 108810166 YPN_r022 - 12 Thr tRNA
262226 262310 + 85 108810166 YPN_r023 - 18 Tyr tRNA
262460 262534 + 75 108810166 YPN_r024 - 01 Gly tRNA
262541 262616 + 76 108810166 YPN_r025 - 12 Thr tRNA
293240 294782 + 1543 108810166 YPN_r026 - 16S ribosomal RNA
294919 294994 + 76 108810166 YPN_r027 - 04 Glu tRNA
295247 298153 + 2907 108810166 YPN_r028 - 23S ribosomal RNA
298261 298380 + 120 108810166 YPN_r029 - 5S ribosomal RNA
306864 306970 + 107 108810166 YPN_r030 - Spot 42 RNA
308820 309074 + 255 108810166 YPN_r031 - regulatory RNA CsrC
366563 366649 - 87 108810166 YPN_r032 - 15 Leu tRNA
608511 608587 - 77 108810166 YPN_r033 - 16 Met tRNA
627242 627431 + 190 108810166 YPN_r034 - FMN riboswitch
706288 706461 - 174 108810166 YPN_r035 - SraG RNA
763209 763293 + 85 108810166 YPN_r036 - 15 Leu tRNA
924640 924732 + 93 108810166 YPN_r037 - 08 Ser tRNA
924741 924817 + 77 108810166 YPN_r038 - 11 Arg tRNA
924875 924951 + 77 108810166 YPN_r039 - 11 Arg tRNA
925031 925107 + 77 108810166 YPN_r040 - 11 Arg tRNA
953365 954907 + 1543 108810166 YPN_r041 - 16S ribosomal RNA
955010 955086 + 77 108810166 YPN_r042 - 14 Ile tRNA
955138 955213 + 76 108810166 YPN_r043 - 02 Ala tRNA
955432 958338 + 2907 108810166 YPN_r044 - 23S ribosomal RNA
958446 958565 + 120 108810166 YPN_r045 - 5S ribosomal RNA
1107007 1107126 + 120 108810166 YPN_r046 - SRP RNA
1179290 1179366 + 77 108810166 YPN_r047 - 11 Arg tRNA
1272072 1272146 - 75 108810166 YPN_r048 - 05 Gln tRNA
1272152 1272228 - 77 108810166 YPN_r049 - 16 Met tRNA
1272261 1272335 - 75 108810166 YPN_r050 - 05 Gln tRNA
1272431 1272505 - 75 108810166 YPN_r051 - 05 Gln tRNA
1272535 1272619 - 85 108810166 YPN_r052 - 15 Leu tRNA
1272627 1272703 - 77 108810166 YPN_r053 - 16 Met tRNA
1387990 1388154 - 165 108810166 YPN_r054 - tke1 RNA
1588507 1588582 - 76 108810166 YPN_r055 - 02 Ala tRNA
1588660 1588735 - 76 108810166 YPN_r056 - 02 Ala tRNA
1591367 1591442 + 76 108810166 YPN_r057 - 13 Val tRNA
1591479 1591554 + 76 108810166 YPN_r058 - 13 Val tRNA
1591599 1591674 + 76 108810166 YPN_r059 - 13 Val tRNA
1591874 1591949 + 76 108810166 YPN_r060 - 10 Lys tRNA
1707540 1707629 - 90 108810166 YPN_r061 - 08 Ser tRNA
1715950 1716039 - 90 108810166 YPN_r062 - 08 Ser tRNA
1849381 1849465 - 85 108810166 YPN_r063 - 18 Tyr tRNA
2087229 2087305 + 77 108810166 YPN_r064 - 13 Val tRNA
2087365 2087441 + 77 108810166 YPN_r065 - 13 Val tRNA
2500260 2500334 - 75 108810166 YPN_r067 - 11 Arg tRNA
2536627 2536712 - 86 108810166 YPN_r068 - 15 Leu tRNA
2536723 2536796 - 74 108810166 YPN_r069 - 19 Cys tRNA
2536849 2536924 - 76 108810166 YPN_r070 - 01 Gly tRNA
2543373 2543448 - 76 108810166 YPN_r071 - 10 Lys tRNA
2619107 2619356 + 250 108810166 YPN_r072 - SraC_RyeA RNA
2619151 2619246 - 96 108810166 YPN_r073 - RyeB RNA
2672982 2673057 + 76 108810166 YPN_r074 - 07 Asn tRNA
2687286 2687361 + 76 108810166 YPN_r075 - 07 Asn tRNA
2843940 2844027 - 88 108810166 YPN_r076 - 08 Ser tRNA
3067066 3067142 + 77 108810166 YPN_r077 - 03 Pro tRNA
3099191 3099266 - 76 108810166 YPN_r078 - 12 Thr tRNA
3099272 3099359 - 88 108810166 YPN_r079 - 08 Ser tRNA
3101831 3101965 + 135 108810166 YPN_r080 - antisense RNA affecting ompF expression
3230551 3230620 - 70 108810166 YPN_r081 - Xaa tRNA
3230649 3230724 - 76 108810166 YPN_r082 - 10 Lys tRNA
3230752 3230827 - 76 108810166 YPN_r083 - 10 Lys tRNA
3257923 3258286 + 364 108810166 YPN_r084 - tmRNA
3273690 3273766 - 77 108810166 YPN_r085 - 06 Asp tRNA
3281057 3281133 - 77 108810166 YPN_r086 - 06 Asp tRNA
3281257 3281376 - 120 108810166 YPN_r087 - 5S ribosomal RNA
3281484 3284390 - 2907 108810166 YPN_r088 - 23S ribosomal RNA
3284643 3284718 - 76 108810166 YPN_r089 - 04 Glu tRNA
3284855 3286397 - 1543 108810166 YPN_r090 - 16S ribosomal RNA
3327216 3327497 - 282 108810166 YPN_r091 - regulatory RNA csrB
3339485 3339561 + 77 108810166 YPN_r092 - 16 Met tRNA
3339685 3339761 + 77 108810166 YPN_r093 - 16 Met tRNA
3469332 3469405 - 74 108810166 YPN_r094 - 01 Gly tRNA
3499848 3500029 + 182 108810166 YPN_r095 - 6S ribosomal RNA
3559830 3559905 + 76 108810166 YPN_r096 - 17 Phe tRNA
3701919 3701995 - 77 108810166 YPN_r097 - 16 Met tRNA
3702056 3702142 - 87 108810166 YPN_r098 - 15 Leu tRNA
3766790 3766865 - 76 108810166 YPN_r099 - 01 Gly tRNA
3766957 3767032 - 76 108810166 YPN_r100 - 01 Gly tRNA
3796802 3796877 + 76 108810166 YPN_r101 - 17 Phe tRNA
3901359 3901478 - 120 108810166 YPN_r102 - 5S ribosomal RNA
3901586 3904492 - 2907 108810166 YPN_r103 - 23S ribosomal RNA
3904745 3904820 - 76 108810166 YPN_r104 - 04 Glu tRNA
3904957 3906499 - 1543 108810166 YPN_r105 - 16S ribosomal RNA
3912327 3912701 - 375 108810166 YPN_r106 - RNA component of RNaseP
4193176 4193252 - 77 108810166 YPN_r107 - 03 Pro tRNA
4223558 4223648 - 91 108810166 YPN_r108 - Sec tRNA