Материалы:NC 008150

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008150            4702289 bp    DNA     circular BCT 08-AUG-2007
   DEFINITION  Yersinia pestis Antiqua, complete genome.
   ACCESSION   NC_008150
   VERSION     NC_008150.1  GI:108805998
   KEYWORDS    .
   SOURCE      Yersinia pestis Antiqua
     ORGANISM  Yersinia pestis Antiqua
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4702289)
     AUTHORS   Chain,P.S., Hu,P., Malfatti,S.A., Radnedge,L., Larimer,F.,
               Vergez,L.M., Worsham,P., Chu,M.C. and Andersen,G.L.
     TITLE     Complete Genome Sequence of Yersinia pestis Strains Antiqua and
               Nepal516: Evidence of Gene Reduction in an Emerging Pathogen
     JOURNAL   J. Bacteriol. 188 (12), 4453-4463 (2006)
      PUBMED   16740952
   REFERENCE   2  (bases 1 to 4702289)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F.,
               Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G.L. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of chromosome of Yersinia pestis Antiqua
     JOURNAL   Unpublished
   REFERENCE   3  (bases 1 to 4702289)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (12-JUN-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   4  (bases 1 to 4702289)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Dalin,E., Tice,H., Pitluck,S., Chain,P.,
               Hu,P., Malfatti,S.A., Radnedge,L., Vergez,L.M., Larimer,F.,
               Land,M., Hauser,L., Worsham,P., Chu,M.C., Andersen,G.L. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-APR-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000308.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 2773254
               Source DNA and bacteria available from Gary Andersen
               (glandersen@lbl.gov)
               Contacts: Gary Andersen (glandersen@lbl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Annotation done by JGI-ORNL
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
14226	15769	+	1544	108805998	YPA_r001	-	16S RNA
15905	15980	+	76	108805998	YPA_r002	-	^{04 Glu tRNA}
16233	19139	+	2907	108805998	YPA_r003	-	23S RNA
19247	19366	+	120	108805998	YPA_r004	-	5S ribosomal RNA
19380	19455	+	76	108805998	YPA_r005	-	^{12 Thr tRNA}
19493	19613	+	121	108805998	YPA_r005a	-	5S ribosomal RNA
64926	65002	-	77	108805998	YPA_r006	-	^{16 Met tRNA}
65063	65149	-	87	108805998	YPA_r007	-	^{15 Leu tRNA}
132736	132996	+	261	108805998	YPA_r008	-	cobalamin riboswitch
136226	137769	+	1544	108805998	YPA_r009	-	16S ribosomal RNA
137905	137980	+	76	108805998	YPA_r010	-	^{04 Glu tRNA}
138233	141139	+	2907	108805998	YPA_r011	-	23S RNA
141247	141366	+	120	108805998	YPA_r012	-	5S ribosomal RNA
141490	141566	+	77	108805998	YPA_r013	-	^{06 Asp tRNA}
141575	141650	+	76	108805998	YPA_r014	-	^{20 Trp tRNA}
199710	199786	+	77	108805998	YPA_r015	-	^{11 Arg tRNA}
199870	199945	+	76	108805998	YPA_r016	-	^{09 His tRNA}
199962	200048	+	87	108805998	YPA_r017	-	^{15 Leu tRNA}
200124	200200	+	77	108805998	YPA_r018	-	^{03 Pro tRNA}
354159	354234	-	76	108805998	YPA_r019	-	^{17 Phe tRNA}
416678	416859	-	182	108805998	YPA_r020	-	6S RNA
447302	447375	+	74	108805998	YPA_r021	-	^{01 Gly tRNA}
578891	578967	-	77	108805998	YPA_r022	-	^{16 Met tRNA}
579091	579167	-	77	108805998	YPA_r023	-	^{16 Met tRNA}
593115	593396	+	282	108805998	YPA_r024	-	regulatory RNA csrB
634214	635757	+	1544	108805998	YPA_r025	-	16S ribosomal RNA
635893	635968	+	76	108805998	YPA_r026	-	^{04 Glu tRNA}
636221	639126	+	2906	108805998	YPA_r027	-	23S ribosomal RNA
639234	639353	+	120	108805998	YPA_r028	-	5S ribosomal RNA
639477	639553	+	77	108805998	YPA_r029	-	^{06 Asp tRNA}
646844	646920	+	77	108805998	YPA_r030	-	^{06 Asp tRNA}
662324	662687	-	364	108805998	YPA_r031	-	tmRNA
689784	689859	+	76	108805998	YPA_r032	-	^{10 Lys tRNA}
689887	689962	+	76	108805998	YPA_r033	-	^{10 Lys tRNA}
689991	690060	+	70	108805998	YPA_r034	-	Xaa tRNA
851568	851655	+	88	108805998	YPA_r035	-	^{08 Ser tRNA}
1009502	1009577	-	76	108805998	YPA_r036	-	^{07 Asn tRNA}
1084489	1084623	-	135	108805998	YPA_r037	-	antisense RNA affecting ompF expression
1087076	1087163	+	88	108805998	YPA_r038	-	^{08 Ser tRNA}
1087169	1087244	+	76	108805998	YPA_r039	-	^{12 Thr tRNA}
1121252	1121328	-	77	108805998	YPA_r040	-	^{03 Pro tRNA}
1258121	1258196	-	76	108805998	YPA_r041	-	^{07 Asn tRNA}
1313737	1313986	-	250	108805998	YPA_r042	-	SraC_RyeA RNA
1313847	1313942	+	96	108805998	YPA_r043	-	RyeB RNA
1391586	1391661	+	76	108805998	YPA_r044	-	^{10 Lys tRNA}
1398110	1398185	+	76	108805998	YPA_r045	-	^{01 Gly tRNA}
1398238	1398311	+	74	108805998	YPA_r046	-	^{19 Cys tRNA}
1398322	1398407	+	86	108805998	YPA_r047	-	^{15 Leu tRNA}
1454366	1454441	-	76	108805998	YPA_r048	-	^{07 Asn tRNA}
1583212	1583301	-	90	108805998	YPA_r049	-	^{08 Ser tRNA}
1591622	1591711	-	90	108805998	YPA_r050	-	^{08 Ser tRNA}
1712729	1712813	-	85	108805998	YPA_r051	-	^{18 Tyr tRNA}
1950178	1950254	+	77	108805998	YPA_r052	-	^{13 Val tRNA}
1950314	1950390	+	77	108805998	YPA_r053	-	^{13 Val tRNA}
2366033	2366107	-	75	108805998	YPA_r055	-	^{11 Arg tRNA}
2437931	2438006	-	76	108805998	YPA_r056	-	^{10 Lys tRNA}
2438206	2438281	-	76	108805998	YPA_r057	-	^{13 Val tRNA}
2438318	2438393	-	76	108805998	YPA_r058	-	^{13 Val tRNA}
2441025	2441100	+	76	108805998	YPA_r059	-	^{02 Ala tRNA}
2643555	2643719	+	165	108805998	YPA_r060	-	tke1 RNA
2762307	2762383	+	77	108805998	YPA_r061	-	^{16 Met tRNA}
2762391	2762475	+	85	108805998	YPA_r062	-	^{15 Leu tRNA}
2762505	2762579	+	75	108805998	YPA_r063	-	^{05 Gln tRNA}
2762663	2762737	+	75	108805998	YPA_r064	-	^{05 Gln tRNA}
2762770	2762846	+	77	108805998	YPA_r065	-	^{16 Met tRNA}
2762852	2762926	+	75	108805998	YPA_r066	-	^{05 Gln tRNA}
2857948	2858024	-	77	108805998	YPA_r067	-	^{11 Arg tRNA}
2930127	2930246	-	120	108805998	YPA_r068	-	SRP RNA
3080429	3080548	-	120	108805998	YPA_r069	-	5S ribosomal RNA
3080656	3083562	-	2907	108805998	YPA_r070	-	23S RNA
3083781	3083856	-	76	108805998	YPA_r071	-	^{02 Ala tRNA}
3083908	3083984	-	77	108805998	YPA_r072	-	^{14 Ile tRNA}
3084086	3085629	-	1544	108805998	YPA_r073	-	16S RNA
3275924	3276008	-	85	108805998	YPA_r074	-	^{15 Leu tRNA}
3333110	3333283	+	174	108805998	YPA_r075	-	SraG RNA
3475580	3475769	-	190	108805998	YPA_r076	-	FMN riboswitch
3494424	3494500	+	77	108805998	YPA_r077	-	^{16 Met tRNA}
3829001	3829120	-	120	108805998	YPA_r078	-	5S ribosomal RNA
3829228	3832134	-	2907	108805998	YPA_r079	-	23S RNA
3832353	3832428	-	76	108805998	YPA_r080	-	^{02 Ala tRNA}
3832480	3832556	-	77	108805998	YPA_r081	-	^{14 Ile tRNA}
3832667	3834210	-	1544	108805998	YPA_r082	-	16S RNA
3931783	3932037	-	255	108805998	YPA_r083	-	regulatory RNA CsrC
3933887	3933993	-	107	108805998	YPA_r084	-	Spot 42 RNA
3942466	3942584	-	119	108805998	YPA_r085	-	5S ribosomal RNA
3942693	3945599	-	2907	108805998	YPA_r086	-	23S RNA
3945852	3945927	-	76	108805998	YPA_r087	-	^{04 Glu tRNA}
3946064	3947607	-	1544	108805998	YPA_r088	-	16S RNA
4032348	4032467	-	120	108805998	YPA_r089	-	5S ribosomal RNA
4032575	4035482	-	2908	108805998	YPA_r090	-	23S RNA
4035701	4035776	-	76	108805998	YPA_r091	-	^{02 Ala tRNA}
4035828	4035904	-	77	108805998	YPA_r092	-	^{14 Ile tRNA}
4036006	4037551	-	1546	108805998	YPA_r093	-	16S RNA
4068174	4068249	-	76	108805998	YPA_r094	-	^{12 Thr tRNA}
4068256	4068330	-	75	108805998	YPA_r095	-	^{01 Gly tRNA}
4068480	4068564	-	85	108805998	YPA_r096	-	^{18 Tyr tRNA}
4068583	4068658	-	76	108805998	YPA_r097	-	^{12 Thr tRNA}
4212438	4212812	+	375	108805998	YPA_r098	-	RNA component of RNaseP
4318870	4318946	-	77	108805998	YPA_r099	-	^{03 Pro tRNA}
4344635	4344721	+	87	108805998	YPA_r100	-	^{15 Leu tRNA}
4412556	4412631	-	76	108805998	YPA_r101	-	^{01 Gly tRNA}
4412723	4412798	-	76	108805998	YPA_r102	-	^{01 Gly tRNA}
4442682	4442757	+	76	108805998	YPA_r103	-	^{17 Phe tRNA}
4643204	4643294	-	91	108805998	YPA_r104	-	Sec tRNA