Материалы:NC 008260

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008260            3120143 bp    DNA     circular BCT 26-JAN-2007
   DEFINITION  Alcanivorax borkumensis SK2, complete genome.
   ACCESSION   NC_008260
   VERSION     NC_008260.1  GI:110832861
   KEYWORDS    complete genome.
   SOURCE      Alcanivorax borkumensis SK2
     ORGANISM  Alcanivorax borkumensis SK2
               Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
               Alcanivoracaceae; Alcanivorax.
   REFERENCE   1  (bases 1 to 3120143)
     AUTHORS   Schneiker,S., Martins dos Santos,V.A., Bartels,D., Bekel,T.,
               Brecht,M., Buhrmester,J., Chernikova,T.N., Denaro,R., Ferrer,M.,
               Gertler,C., Goesmann,A., Golyshina,O.V., Kaminski,F.,
               Khachane,A.N., Lang,S., Linke,B., McHardy,A.C., Meyer,F.,
               Nechitaylo,T., Puhler,A., Regenhardt,D., Rupp,O., Sabirova,J.S.,
               Selbitschka,W., Yakimov,M.M., Timmis,K.N., Vorholter,F.J.,
               Weidner,S., Kaiser,O. and Golyshin,P.N.
     TITLE     Genome sequence of the ubiquitous hydrocarbon-degrading marine
               bacterium Alcanivorax borkumensis
     JOURNAL   Nat. Biotechnol. 24 (8), 997-1004 (2006)
      PUBMED   16878126
   REFERENCE   2  (bases 1 to 3120143)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-JUL-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 3120143)
     AUTHORS   Martins dos Santos,V.A.P. and Schneiker,S.
     TITLE     Direct Submission
     JOURNAL   Submitted (11-JUL-2006) Martins dos Santos V.A.P., Division of
               Microbiology, German Research Center for Biotechnology, D-38124
               Braunschweig, Germany Schneiker S.; Lehrstuhl fuer Genetik,
               Bielefeld University Universitaetsstrasse 25, 33615 Bielefeld,
               Germany
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from AM286690.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
357700	357785	+	86	110832861	ABO_tRNA_01	-	^{15 Leu tRNA}
357997	358073	+	77	110832861	ABO_tRNA_02	-	^{16 Met tRNA}
403189	404730	+	1542	110832861	ABO_r1	-	16S ribosomal RNA
404807	404883	+	77	110832861	ABO_tRNA_03	-	^{14 Ile tRNA}
404901	404976	+	76	110832861	ABO_tRNA_04	-	^{02 Ala tRNA}
405252	408162	+	2911	110832861	ABO_r2	-	23S ribosomal RNA
408339	408459	+	121	110832861	ABO_r3	-	5S ribosomal RNA
413351	413426	+	76	110832861	ABO_tRNA_05	-	^{12 Thr tRNA}
413504	413587	+	84	110832861	ABO_tRNA_06	-	^{18 Tyr tRNA}
413664	413737	+	74	110832861	ABO_tRNA_07	-	^{01 Gly tRNA}
413782	413857	+	76	110832861	ABO_tRNA_08	-	^{12 Thr tRNA}
415271	415346	+	76	110832861	ABO_tRNA_09	-	^{20 Trp tRNA}
530914	532455	+	1542	110832861	ABO_r4	-	16S ribosomal RNA
532785	535695	+	2911	110832861	ABO_r5	-	23S ribosomal RNA
535872	535992	+	121	110832861	ABO_r6	-	5S ribosomal RNA
548346	548432	+	87	110832861	ABO_tRNA_10	-	^{15 Leu tRNA}
570215	570290	-	76	110832861	ABO_tRNA_11	-	^{05 Gln tRNA}
721889	721973	+	85	110832861	ABO_tRNA_12	-	^{15 Leu tRNA}
856687	856762	+	76	110832861	ABO_tRNA_13	-	^{10 Lys tRNA}
875508	875584	+	77	110832861	ABO_tRNA_14	-	^{13 Val tRNA}
938279	938355	+	77	110832861	ABO_tRNA_15	-	^{11 Arg tRNA}
972582	972657	+	76	110832861	ABO_tRNA_16	-	^{04 Glu tRNA}
972692	972767	+	76	110832861	ABO_tRNA_17	-	^{01 Gly tRNA}
978121	978208	-	88	110832861	ABO_tRNA_18	-	^{08 Ser tRNA}
1057919	1057994	-	76	110832861	ABO_tRNA_19	-	^{07 Asn tRNA}
1123305	1123380	+	76	110832861	ABO_tRNA_20	-	^{13 Val tRNA}
1123417	1123493	+	77	110832861	ABO_tRNA_21	-	^{06 Asp tRNA}
1373493	1373569	+	77	110832861	ABO_tRNA_22	-	^{03 Pro tRNA}
1373594	1373670	+	77	110832861	ABO_tRNA_23	-	^{11 Arg tRNA}
1373701	1373776	+	76	110832861	ABO_tRNA_24	-	^{09 His tRNA}
1380529	1380605	+	77	110832861	ABO_tRNA_25	-	^{06 Asp tRNA}
1474964	1475051	+	88	110832861	ABO_tRNA_26	-	^{08 Ser tRNA}
1481751	1481826	+	76	110832861	ABO_tRNA_27	-	^{01 Gly tRNA}
1481879	1481952	+	74	110832861	ABO_tRNA_28	-	^{19 Cys tRNA}
1482100	1482186	+	87	110832861	ABO_tRNA_29	-	^{15 Leu tRNA}
1651601	1651677	+	77	110832861	ABO_tRNA_30	-	^{03 Pro tRNA}
1723280	1723355	-	76	110832861	ABO_tRNA_31	-	^{04 Glu tRNA}
1723361	1723436	-	76	110832861	ABO_tRNA_32	-	^{02 Ala tRNA}
1753004	1753079	+	76	110832861	ABO_tRNA_33	-	^{12 Thr tRNA}
1807899	1807972	-	74	110832861	ABO_tRNA_34	-	^{01 Gly tRNA}
2044850	2044939	-	90	110832861	ABO_tRNA_35	-	^{08 Ser tRNA}
2067041	2067117	+	77	110832861	ABO_tRNA_36	-	^{11 Arg tRNA}
2104365	2104441	-	77	110832861	ABO_tRNA_37	-	^{03 Pro tRNA}
2149218	2149294	+	77	110832861	ABO_tRNA_38	-	^{16 Met tRNA}
2257578	2257696	-	119	110832861	ABO_r7	-	5S ribosomal RNA
2257877	2260781	-	2905	110832861	ABO_r8	-	23S ribosomal RNA
2261115	2262655	-	1541	110832861	ABO_r9	-	16S ribosomal RNA
2352210	2352286	+	77	110832861	ABO_tRNA_39	-	^{16 Met tRNA}
2504025	2504111	+	87	110832861	ABO_tRNA_40	-	^{15 Leu tRNA}
2607047	2607122	+	76	110832861	ABO_tRNA_41	-	^{17 Phe tRNA}
2885700	2885776	+	77	110832861	ABO_tRNA_42	-	^{11 Arg tRNA}