Материалы:NC 008321

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008321            4706287 bp    DNA     circular BCT 05-SEP-2006
   DEFINITION  Shewanella sp. MR-4, complete genome.
   ACCESSION   NC_008321
   VERSION     NC_008321.1  GI:113968346
   KEYWORDS    .
   SOURCE      Shewanella sp. MR-4
     ORGANISM  Shewanella sp. MR-4
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4706287)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella sp. MR-4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4706287)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4706287)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000446.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000369
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes:There are an unresolved number of tandem repeats
               in the region 419,046-426,962.
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
42695	44229	+	1535	113968346	Shewmr4_R0001	-	16S ribosomal RNA
44542	47434	+	2893	113968346	Shewmr4_R0002	-	23S ribosomal RNA
47656	47771	+	116	113968346	Shewmr4_R0003	-	5S ribosomal RNA
47808	47884	+	77	113968346	Shewmr4_R0004	-	^{06 Asp tRNA}
121959	122049	-	91	113968346	Shewmr4_R0005	-	Sec tRNA
152960	153194	-	235	113968346	Shewmr4_R0006	-
201986	203520	+	1535	113968346	Shewmr4_R0007	-	16S ribosomal RNA
203641	203717	+	77	113968346	Shewmr4_R0008	-	^{14 Ile tRNA}
203763	203838	+	76	113968346	Shewmr4_R0009	-	^{02 Ala tRNA}
204112	207004	+	2893	113968346	Shewmr4_R0010	-	23S ribosomal RNA
207136	207251	+	116	113968346	Shewmr4_R0011	-	5S ribosomal RNA
210615	210690	+	76	113968346	Shewmr4_R0012	-	^{12 Thr tRNA}
210698	210782	+	85	113968346	Shewmr4_R0013	-	^{18 Tyr tRNA}
210818	210891	+	74	113968346	Shewmr4_R0014	-	^{01 Gly tRNA}
210901	210976	+	76	113968346	Shewmr4_R0015	-	^{12 Thr tRNA}
253459	254993	+	1535	113968346	Shewmr4_R0016	-	16S ribosomal RNA
255305	258197	+	2893	113968346	Shewmr4_R0017	-	23S ribosomal RNA
258419	258534	+	116	113968346	Shewmr4_R0018	-	5S ribosomal RNA
258571	258647	+	77	113968346	Shewmr4_R0019	-	^{06 Asp tRNA}
405888	405964	+	77	113968346	Shewmr4_R0020	-	^{11 Arg tRNA}
406018	406093	+	76	113968346	Shewmr4_R0021	-	^{09 His tRNA}
406195	406271	+	77	113968346	Shewmr4_R0022	-	^{03 Pro tRNA}
406325	406401	+	77	113968346	Shewmr4_R0023	-	^{03 Pro tRNA}
683545	683620	+	76	113968346	Shewmr4_R0024	-	^{01 Gly tRNA}
683653	683728	+	76	113968346	Shewmr4_R0025	-	^{01 Gly tRNA}
683761	683836	+	76	113968346	Shewmr4_R0026	-	^{01 Gly tRNA}
683881	683956	+	76	113968346	Shewmr4_R0027	-	^{01 Gly tRNA}
827890	828008	+	119	113968346	Shewmr4_R0028	-
828009	828129	+	121	113968346	Shewmr4_R0029	-
994574	994741	+	168	113968346	Shewmr4_R0030	-
1145358	1145434	+	77	113968346	Shewmr4_R0031	-	^{20 Trp tRNA}
1176598	1176674	+	77	113968346	Shewmr4_R0032	-	^{16 Met tRNA}
1176729	1176813	+	85	113968346	Shewmr4_R0033	-	^{15 Leu tRNA}
1176861	1176935	+	75	113968346	Shewmr4_R0034	-	^{05 Gln tRNA}
1176958	1177032	+	75	113968346	Shewmr4_R0035	-	^{05 Gln tRNA}
1177034	1177110	+	77	113968346	Shewmr4_R0036	-	^{16 Met tRNA}
1177194	1177278	+	85	113968346	Shewmr4_R0037	-	^{15 Leu tRNA}
1177299	1177373	+	75	113968346	Shewmr4_R0038	-	^{05 Gln tRNA}
1192179	1192265	+	87	113968346	Shewmr4_R0039	-	^{15 Leu tRNA}
1192349	1192425	+	77	113968346	Shewmr4_R0040	-	^{16 Met tRNA}
1198787	1198899	+	113	113968346	Shewmr4_R0041	-
1327447	1327538	+	92	113968346	Shewmr4_R0042	-	^{08 Ser tRNA}
1327559	1327635	+	77	113968346	Shewmr4_R0043	-	^{11 Arg tRNA}
1327666	1327742	+	77	113968346	Shewmr4_R0044	-	^{11 Arg tRNA}
1327825	1327901	+	77	113968346	Shewmr4_R0045	-	^{11 Arg tRNA}
1327945	1328021	+	77	113968346	Shewmr4_R0046	-	^{11 Arg tRNA}
1328066	1328142	+	77	113968346	Shewmr4_R0047	-	^{11 Arg tRNA}
1328179	1328270	+	92	113968346	Shewmr4_R0048	-	^{08 Ser tRNA}
1328365	1328441	+	77	113968346	Shewmr4_R0049	-	^{11 Arg tRNA}
1380672	1380747	-	76	113968346	Shewmr4_R0050	-	^{12 Thr tRNA}
1380754	1380829	-	76	113968346	Shewmr4_R0051	-	^{17 Phe tRNA}
1381287	1381362	-	76	113968346	Shewmr4_R0052	-	^{12 Thr tRNA}
1381369	1381444	-	76	113968346	Shewmr4_R0053	-	^{17 Phe tRNA}
1460028	1460103	-	76	113968346	Shewmr4_R0054	-	^{11 Arg tRNA}
1587682	1587757	-	76	113968346	Shewmr4_R0056	-	^{13 Val tRNA}
1587783	1587858	-	76	113968346	Shewmr4_R0057	-	^{13 Val tRNA}
1587900	1587975	-	76	113968346	Shewmr4_R0058	-	^{13 Val tRNA}
1588017	1588092	-	76	113968346	Shewmr4_R0059	-	^{13 Val tRNA}
1588125	1588200	-	76	113968346	Shewmr4_R0060	-	^{13 Val tRNA}
1588249	1588324	-	76	113968346	Shewmr4_R0061	-	^{13 Val tRNA}
1590422	1590497	+	76	113968346	Shewmr4_R0062	-	^{02 Ala tRNA}
1590565	1590640	+	76	113968346	Shewmr4_R0063	-	^{04 Glu tRNA}
1590748	1590823	+	76	113968346	Shewmr4_R0064	-	^{02 Ala tRNA}
1590888	1590963	+	76	113968346	Shewmr4_R0065	-	^{04 Glu tRNA}
1591144	1591219	+	76	113968346	Shewmr4_R0066	-	^{04 Glu tRNA}
1591317	1591392	+	76	113968346	Shewmr4_R0067	-	^{04 Glu tRNA}
1591573	1591648	+	76	113968346	Shewmr4_R0068	-	^{04 Glu tRNA}
1591829	1591904	+	76	113968346	Shewmr4_R0069	-	^{04 Glu tRNA}
1592085	1592160	+	76	113968346	Shewmr4_R0070	-	^{04 Glu tRNA}
1791058	1792592	+	1535	113968346	Shewmr4_R0071	-	16S ribosomal RNA
1792693	1792769	+	77	113968346	Shewmr4_R0072	-	^{14 Ile tRNA}
1792908	1792983	+	76	113968346	Shewmr4_R0073	-	^{02 Ala tRNA}
1793259	1796151	+	2893	113968346	Shewmr4_R0074	-	23S ribosomal RNA
1796373	1796488	+	116	113968346	Shewmr4_R0075	-	5S ribosomal RNA
1815933	1816009	-	77	113968346	Shewmr4_R0076	-	^{16 Met tRNA}
1816057	1816133	-	77	113968346	Shewmr4_R0077	-	^{16 Met tRNA}
1816223	1816299	-	77	113968346	Shewmr4_R0078	-	^{16 Met tRNA}
1816338	1816414	-	77	113968346	Shewmr4_R0079	-	^{16 Met tRNA}
1825840	1825930	+	91	113968346	Shewmr4_R0080	-	^{08 Ser tRNA}
1826727	1826817	+	91	113968346	Shewmr4_R0081	-	^{08 Ser tRNA}
1830560	1830635	+	76	113968346	Shewmr4_R0082	-	^{01 Gly tRNA}
1830657	1830730	+	74	113968346	Shewmr4_R0083	-	^{19 Cys tRNA}
1830779	1830865	+	87	113968346	Shewmr4_R0084	-	^{15 Leu tRNA}
1830996	1831082	+	87	113968346	Shewmr4_R0085	-	^{15 Leu tRNA}
1999543	1999630	+	88	113968346	Shewmr4_R0086	-	^{08 Ser tRNA}
2239340	2239438	+	99	113968346	Shewmr4_R0087	-
2328222	2328298	-	77	113968346	Shewmr4_R0089	-	^{13 Val tRNA}
2328337	2328413	-	77	113968346	Shewmr4_R0090	-	^{13 Val tRNA}
2350019	2350109	+	91	113968346	Shewmr4_R0091	-	^{08 Ser tRNA}
2406007	2406093	-	87	113968346	Shewmr4_R0092	-	^{15 Leu tRNA}
2406143	2406216	-	74	113968346	Shewmr4_R0093	-	^{19 Cys tRNA}
2406240	2406315	-	76	113968346	Shewmr4_R0094	-	^{01 Gly tRNA}
2448931	2449015	+	85	113968346	Shewmr4_R0095	-	^{18 Tyr tRNA}
2449055	2449139	+	85	113968346	Shewmr4_R0096	-	^{18 Tyr tRNA}
2449256	2449340	+	85	113968346	Shewmr4_R0097	-	^{18 Tyr tRNA}
2455379	2455454	+	76	113968346	Shewmr4_R0098	-	^{07 Asn tRNA}
2455501	2455576	+	76	113968346	Shewmr4_R0099	-	^{07 Asn tRNA}
2455607	2455682	+	76	113968346	Shewmr4_R0100	-	^{07 Asn tRNA}
2455728	2455803	+	76	113968346	Shewmr4_R0101	-	^{07 Asn tRNA}
2455850	2455925	+	76	113968346	Shewmr4_R0102	-	^{07 Asn tRNA}
2583734	2583810	-	77	113968346	Shewmr4_R0103	-	^{06 Asp tRNA}
2583868	2583944	-	77	113968346	Shewmr4_R0104	-	^{06 Asp tRNA}
2681894	2681970	-	77	113968346	Shewmr4_R0105	-	^{03 Pro tRNA}
2758388	2758498	-	111	113968346	Shewmr4_R0106	-
2822195	2822270	-	76	113968346	Shewmr4_R0107	-	^{10 Lys tRNA}
2822432	2822507	-	76	113968346	Shewmr4_R0108	-	^{10 Lys tRNA}
2822543	2822618	-	76	113968346	Shewmr4_R0109	-	^{10 Lys tRNA}
2822782	2822857	-	76	113968346	Shewmr4_R0110	-	^{10 Lys tRNA}
2822895	2822970	-	76	113968346	Shewmr4_R0111	-	^{10 Lys tRNA}
2823006	2823081	-	76	113968346	Shewmr4_R0112	-	^{10 Lys tRNA}
2823136	2823211	-	76	113968346	Shewmr4_R0113	-	^{10 Lys tRNA}
2943926	2944043	-	118	113968346	Shewmr4_R0114	-	SRP RNA; RNA component of signal recognition particle
2967638	2967713	-	76	113968346	Shewmr4_R0115	-	^{09 His tRNA}
2967723	2967799	-	77	113968346	Shewmr4_R0116	-	^{11 Arg tRNA}
2967915	2967991	-	77	113968346	Shewmr4_R0117	-	^{03 Pro tRNA}
3146520	3146671	-	152	113968346	Shewmr4_R0118	-
3323222	3323576	+	355	113968346	Shewmr4_R0119	-	tmRNA
3471665	3471741	+	77	113968346	Shewmr4_R0120	-	^{16 Met tRNA}
3569887	3570002	-	116	113968346	Shewmr4_R0121	-	5S ribosomal RNA
3570224	3573116	-	2893	113968346	Shewmr4_R0122	-	23S ribosomal RNA
3573475	3575009	-	1535	113968346	Shewmr4_R0123	-	16S ribosomal RNA
3582813	3582888	+	76	113968346	Shewmr4_R0124	-	^{17 Phe tRNA}
3582944	3583030	+	87	113968346	Shewmr4_R0125	-	^{15 Leu tRNA}
3583074	3583160	+	87	113968346	Shewmr4_R0126	-	^{15 Leu tRNA}
3621834	3621966	+	133	113968346	Shewmr4_R0127	-
3850188	3850274	-	87	113968346	Shewmr4_R0128	-	^{15 Leu tRNA}
3944128	3944359	-	232	113968346	Shewmr4_R0129	-
4250262	4250377	-	116	113968346	Shewmr4_R0130	-	5S ribosomal RNA
4250508	4253400	-	2893	113968346	Shewmr4_R0131	-	23S ribosomal RNA
4253712	4255246	-	1535	113968346	Shewmr4_R0132	-	16S ribosomal RNA
4256466	4256541	-	76	113968346	Shewmr4_R0133	-	^{12 Thr tRNA}
4256575	4256690	-	116	113968346	Shewmr4_R0134	-	5S ribosomal RNA
4256912	4259804	-	2893	113968346	Shewmr4_R0135	-	23S ribosomal RNA
4260116	4261650	-	1535	113968346	Shewmr4_R0136	-	16S ribosomal RNA
4400137	4400436	-	300	113968346	Shewmr4_R0137	-	RNA component of RNaseP
4432961	4433076	-	116	113968346	Shewmr4_R0138	-	5S ribosomal RNA
4433298	4436190	-	2893	113968346	Shewmr4_R0139	-	23S ribosomal RNA
4436502	4438036	-	1535	113968346	Shewmr4_R0140	-	16S ribosomal RNA
4672013	4672128	-	116	113968346	Shewmr4_R0141	-	5S ribosomal RNA
4672350	4675242	-	2893	113968346	Shewmr4_R0142	-	23S ribosomal RNA
4675601	4677135	-	1535	113968346	Shewmr4_R0143	-	16S ribosomal RNA