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Материалы:NC 008322

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   LOCUS       NC_008322            4792610 bp    DNA     circular BCT 05-SEP-2006
   DEFINITION  Shewanella sp. MR-7, complete genome.
   ACCESSION   NC_008322
   VERSION     NC_008322.1  GI:114045513
   KEYWORDS    .
   SOURCE      Shewanella sp. MR-7
     ORGANISM  Shewanella sp. MR-7
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4792610)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Shewanella sp. MR-7
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4792610)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (05-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4792610)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Nealson,K., Konstantinidis,K., Klappenbach,J.,
               Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (22-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000444.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000370
               Source DNA and bacteria available from James Tiedje
               (tiedjej@msu.edu)
               Contacts: James Tiedje (tiedjej@msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
41406 42940 + 1535 114045513 Shewmr7_R0001 - 16S ribosomal RNA
43248 46140 + 2893 114045513 Shewmr7_R0002 - 23S ribosomal RNA
46362 46477 + 116 114045513 Shewmr7_R0003 - 5S ribosomal RNA
46514 46590 + 77 114045513 Shewmr7_R0004 - 06 Asp tRNA
119309 119399 - 91 114045513 Shewmr7_R0005 - Sec tRNA
147970 148204 - 235 114045513 Shewmr7_R0006 -
197497 199031 + 1535 114045513 Shewmr7_R0007 - 16S ribosomal RNA
199103 199179 + 77 114045513 Shewmr7_R0008 - 14 Ile tRNA
199317 199392 + 76 114045513 Shewmr7_R0009 - 02 Ala tRNA
199667 202559 + 2893 114045513 Shewmr7_R0010 - 23S ribosomal RNA
202781 202896 + 116 114045513 Shewmr7_R0011 - 5S ribosomal RNA
206260 206335 + 76 114045513 Shewmr7_R0012 - 12 Thr tRNA
206343 206427 + 85 114045513 Shewmr7_R0013 - 18 Tyr tRNA
206463 206536 + 74 114045513 Shewmr7_R0014 - 01 Gly tRNA
206546 206621 + 76 114045513 Shewmr7_R0015 - 12 Thr tRNA
249066 250600 + 1535 114045513 Shewmr7_R0016 - 16S ribosomal RNA
250913 253805 + 2893 114045513 Shewmr7_R0017 - 23S ribosomal RNA
254027 254142 + 116 114045513 Shewmr7_R0018 - 5S ribosomal RNA
286671 286970 + 300 114045513 Shewmr7_R0019 - RNA component of RNaseP
441391 442925 + 1535 114045513 Shewmr7_R0020 - 16S ribosomal RNA
442997 443073 + 77 114045513 Shewmr7_R0021 - 14 Ile tRNA
443211 443286 + 76 114045513 Shewmr7_R0022 - 02 Ala tRNA
443561 446453 + 2893 114045513 Shewmr7_R0023 - 23S ribosomal RNA
446675 446790 + 116 114045513 Shewmr7_R0024 - 5S ribosomal RNA
446824 446899 + 76 114045513 Shewmr7_R0025 - 12 Thr tRNA
448118 449652 + 1535 114045513 Shewmr7_R0026 - 16S ribosomal RNA
449960 452852 + 2893 114045513 Shewmr7_R0027 - 23S ribosomal RNA
453074 453189 + 116 114045513 Shewmr7_R0028 - 5S ribosomal RNA
760584 760818 + 235 114045513 Shewmr7_R0029 -
876962 877048 + 87 114045513 Shewmr7_R0030 - 15 Leu tRNA
1084129 1084261 - 133 114045513 Shewmr7_R0031 -
1174523 1174599 + 77 114045513 Shewmr7_R0032 - 20 Trp tRNA
1238945 1239021 + 77 114045513 Shewmr7_R0033 - 16 Met tRNA
1239076 1239160 + 85 114045513 Shewmr7_R0034 - 15 Leu tRNA
1239208 1239282 + 75 114045513 Shewmr7_R0035 - 05 Gln tRNA
1239305 1239379 + 75 114045513 Shewmr7_R0036 - 05 Gln tRNA
1239381 1239457 + 77 114045513 Shewmr7_R0037 - 16 Met tRNA
1239541 1239625 + 85 114045513 Shewmr7_R0038 - 15 Leu tRNA
1239646 1239720 + 75 114045513 Shewmr7_R0039 - 05 Gln tRNA
1254540 1254626 + 87 114045513 Shewmr7_R0040 - 15 Leu tRNA
1254710 1254786 + 77 114045513 Shewmr7_R0041 - 16 Met tRNA
1261148 1261260 + 113 114045513 Shewmr7_R0042 -
1403855 1403946 + 92 114045513 Shewmr7_R0043 - 08 Ser tRNA
1403967 1404043 + 77 114045513 Shewmr7_R0044 - 11 Arg tRNA
1404074 1404150 + 77 114045513 Shewmr7_R0045 - 11 Arg tRNA
1404233 1404309 + 77 114045513 Shewmr7_R0046 - 11 Arg tRNA
1404353 1404429 + 77 114045513 Shewmr7_R0047 - 11 Arg tRNA
1404474 1404550 + 77 114045513 Shewmr7_R0048 - 11 Arg tRNA
1404587 1404678 + 92 114045513 Shewmr7_R0049 - 08 Ser tRNA
1404772 1404848 + 77 114045513 Shewmr7_R0050 - 11 Arg tRNA
1457139 1457214 - 76 114045513 Shewmr7_R0051 - 12 Thr tRNA
1457221 1457296 - 76 114045513 Shewmr7_R0052 - 17 Phe tRNA
1457754 1457829 - 76 114045513 Shewmr7_R0053 - 12 Thr tRNA
1457836 1457911 - 76 114045513 Shewmr7_R0054 - 17 Phe tRNA
1536623 1536698 - 76 114045513 Shewmr7_R0055 - 11 Arg tRNA
1659246 1659321 - 76 114045513 Shewmr7_R0056 - 13 Val tRNA
1659347 1659422 - 76 114045513 Shewmr7_R0057 - 13 Val tRNA
1659448 1659523 - 76 114045513 Shewmr7_R0058 - 13 Val tRNA
1659565 1659640 - 76 114045513 Shewmr7_R0059 - 13 Val tRNA
1659673 1659748 - 76 114045513 Shewmr7_R0060 - 13 Val tRNA
1659797 1659872 - 76 114045513 Shewmr7_R0061 - 13 Val tRNA
1661982 1662057 + 76 114045513 Shewmr7_R0062 - 02 Ala tRNA
1662125 1662200 + 76 114045513 Shewmr7_R0063 - 04 Glu tRNA
1662307 1662382 + 76 114045513 Shewmr7_R0064 - 02 Ala tRNA
1662447 1662522 + 76 114045513 Shewmr7_R0065 - 04 Glu tRNA
1662703 1662778 + 76 114045513 Shewmr7_R0066 - 04 Glu tRNA
1662878 1662953 + 76 114045513 Shewmr7_R0067 - 04 Glu tRNA
1663053 1663128 + 76 114045513 Shewmr7_R0068 - 04 Glu tRNA
1663309 1663384 + 76 114045513 Shewmr7_R0069 - 04 Glu tRNA
1663463 1663538 + 76 114045513 Shewmr7_R0070 - 04 Glu tRNA
1862220 1863754 + 1535 114045513 Shewmr7_R0071 - 16S ribosomal RNA
1863967 1864043 + 77 114045513 Shewmr7_R0072 - 14 Ile tRNA
1864181 1864256 + 76 114045513 Shewmr7_R0073 - 02 Ala tRNA
1864531 1867423 + 2893 114045513 Shewmr7_R0074 - 23S ribosomal RNA
1867642 1867757 + 116 114045513 Shewmr7_R0075 - 5S ribosomal RNA
1887423 1887499 - 77 114045513 Shewmr7_R0076 - 16 Met tRNA
1887547 1887623 - 77 114045513 Shewmr7_R0077 - 16 Met tRNA
1887713 1887789 - 77 114045513 Shewmr7_R0078 - 16 Met tRNA
1887828 1887904 - 77 114045513 Shewmr7_R0079 - 16 Met tRNA
1897331 1897421 + 91 114045513 Shewmr7_R0080 - 08 Ser tRNA
1898054 1898144 + 91 114045513 Shewmr7_R0081 - 08 Ser tRNA
1902088 1902163 + 76 114045513 Shewmr7_R0082 - 01 Gly tRNA
1902185 1902258 + 74 114045513 Shewmr7_R0083 - 19 Cys tRNA
1902307 1902393 + 87 114045513 Shewmr7_R0084 - 15 Leu tRNA
1902524 1902610 + 87 114045513 Shewmr7_R0085 - 15 Leu tRNA
2080710 2080797 + 88 114045513 Shewmr7_R0086 - 08 Ser tRNA
2120823 2120883 - 61 114045513 Shewmr7_R0087 -
2259019 2259094 - 76 114045513 Shewmr7_R0088 - 07 Asn tRNA
2259142 2259217 - 76 114045513 Shewmr7_R0089 - 07 Asn tRNA
2259264 2259339 - 76 114045513 Shewmr7_R0090 - 07 Asn tRNA
2259370 2259445 - 76 114045513 Shewmr7_R0091 - 07 Asn tRNA
2259492 2259567 - 76 114045513 Shewmr7_R0092 - 07 Asn tRNA
2265590 2265674 - 85 114045513 Shewmr7_R0093 - 18 Tyr tRNA
2265805 2265889 - 85 114045513 Shewmr7_R0094 - 18 Tyr tRNA
2265929 2266013 - 85 114045513 Shewmr7_R0095 - 18 Tyr tRNA
2308526 2308601 + 76 114045513 Shewmr7_R0096 - 01 Gly tRNA
2308625 2308698 + 74 114045513 Shewmr7_R0097 - 19 Cys tRNA
2308748 2308834 + 87 114045513 Shewmr7_R0098 - 15 Leu tRNA
2365553 2365643 - 91 114045513 Shewmr7_R0099 - 08 Ser tRNA
2387285 2387361 + 77 114045513 Shewmr7_R0100 - 13 Val tRNA
2387400 2387476 + 77 114045513 Shewmr7_R0101 - 13 Val tRNA
2477491 2477589 - 99 114045513 Shewmr7_R0102 -
2652076 2652152 - 77 114045513 Shewmr7_R0103 - 06 Asp tRNA
2652210 2652286 - 77 114045513 Shewmr7_R0104 - 06 Asp tRNA
2749046 2749122 - 77 114045513 Shewmr7_R0105 - 03 Pro tRNA
2822434 2822544 - 111 114045513 Shewmr7_R0106 -
2887897 2887972 - 76 114045513 Shewmr7_R0107 - 10 Lys tRNA
2888134 2888209 - 76 114045513 Shewmr7_R0108 - 10 Lys tRNA
2888246 2888321 - 76 114045513 Shewmr7_R0109 - 10 Lys tRNA
2888358 2888433 - 76 114045513 Shewmr7_R0110 - 10 Lys tRNA
2888471 2888546 - 76 114045513 Shewmr7_R0111 - 10 Lys tRNA
2888707 2888782 - 76 114045513 Shewmr7_R0112 - 10 Lys tRNA
2888837 2888912 - 76 114045513 Shewmr7_R0113 - 10 Lys tRNA
3004611 3004727 - 117 114045513 Shewmr7_R0114 - SRP RNA; RNA component of signal recognition particle
3028285 3028360 - 76 114045513 Shewmr7_R0115 - 09 His tRNA
3028370 3028446 - 77 114045513 Shewmr7_R0116 - 11 Arg tRNA
3028562 3028638 - 77 114045513 Shewmr7_R0117 - 03 Pro tRNA
3203680 3203831 - 152 114045513 Shewmr7_R0118 -
3388384 3388738 + 355 114045513 Shewmr7_R0119 - tmRNA
3542454 3542530 + 77 114045513 Shewmr7_R0120 - 16 Met tRNA
3641000 3641115 - 116 114045513 Shewmr7_R0121 - 5S ribosomal RNA
3641247 3644139 - 2893 114045513 Shewmr7_R0122 - 23S ribosomal RNA
3644452 3645986 - 1535 114045513 Shewmr7_R0123 - 16S ribosomal RNA
3653802 3653877 + 76 114045513 Shewmr7_R0124 - 17 Phe tRNA
3653933 3654019 + 87 114045513 Shewmr7_R0125 - 15 Leu tRNA
3654063 3654149 + 87 114045513 Shewmr7_R0126 - 15 Leu tRNA
3758196 3758363 - 168 114045513 Shewmr7_R0127 -
3918193 3918312 - 120 114045513 Shewmr7_R0128 -
3918313 3918431 - 119 114045513 Shewmr7_R0129 -
4075576 4075651 - 76 114045513 Shewmr7_R0130 - 01 Gly tRNA
4075775 4075850 - 76 114045513 Shewmr7_R0131 - 01 Gly tRNA
4075883 4075958 - 76 114045513 Shewmr7_R0132 - 01 Gly tRNA
4075991 4076066 - 76 114045513 Shewmr7_R0133 - 01 Gly tRNA
4344908 4344984 - 77 114045513 Shewmr7_R0134 - 03 Pro tRNA
4345038 4345114 - 77 114045513 Shewmr7_R0135 - 03 Pro tRNA
4345216 4345291 - 76 114045513 Shewmr7_R0136 - 09 His tRNA
4345345 4345421 - 77 114045513 Shewmr7_R0137 - 11 Arg tRNA
4491693 4491769 - 77 114045513 Shewmr7_R0138 - 06 Asp tRNA
4491806 4491921 - 116 114045513 Shewmr7_R0139 - 5S ribosomal RNA
4492143 4495035 - 2893 114045513 Shewmr7_R0140 - 23S ribosomal RNA
4495343 4496877 - 1535 114045513 Shewmr7_R0141 - 16S ribosomal RNA
4758424 4758539 - 116 114045513 Shewmr7_R0142 - 5S ribosomal RNA
4758761 4761654 - 2894 114045513 Shewmr7_R0143 - 23S ribosomal RNA
4761962 4763496 - 1535 114045513 Shewmr7_R0144 - 16S ribosomal RNA