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Материалы:NC 008345

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   LOCUS       NC_008345            4845257 bp    DNA     circular BCT 15-SEP-2006
   DEFINITION  Shewanella frigidimarina NCIMB 400, complete genome.
   ACCESSION   NC_008345
   VERSION     NC_008345.1  GI:114561188
   KEYWORDS    .
   SOURCE      Shewanella frigidimarina NCIMB 400
     ORGANISM  Shewanella frigidimarina NCIMB 400
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4845257)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Fredrickson,J.K., Kolker,E., McCuel,L.A., DiChristina,T.,
               Nealson,K.H., Newman,D., Tiedje,J.M., Zhou,J., Romine,M.F.,
               Culley,D.E., Serres,M., Chertkov,O., Brettin,T., Bruce,D., Han,C.,
               Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella frigidimarina NCIMB 400
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4845257)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (15-SEP-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4845257)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Fredrickson,J.K., Kolker,E., McCuel,L.A., DiChristina,T.,
               Nealson,K.H., Newman,D., Tiedje,J.M., Zhou,J., Romine,M.F.,
               Culley,D.E., Serres,M., Chertkov,O., Brettin,T., Bruce,D., Han,C.,
               Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Mikhailova,N. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (24-AUG-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000447.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634606
               Source DNA and bacteria available from James K. Fredrickson
               (Jim.fredrickson@pnl.gov)
               Bacteria also available from NCIMB:NCIMB 400
               Contacts: James K. Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
42023 43557 + 1535 114561188 Sfri_R0001 - 16S ribosomal RNA
43945 46860 + 2916 114561188 Sfri_R0002 - 23S ribosomal RNA
47003 47124 + 122 114561188 Sfri_R0003 - 5S ribosomal RNA
141671 143205 + 1535 114561188 Sfri_R0004 - 16S ribosomal RNA
143295 143371 + 77 114561188 Sfri_R0005 - 14 Ile tRNA
143517 143592 + 76 114561188 Sfri_R0006 - 02 Ala tRNA
143928 146843 + 2916 114561188 Sfri_R0007 - 23S ribosomal RNA
146986 147107 + 122 114561188 Sfri_R0008 - 5S ribosomal RNA
151770 151845 + 76 114561188 Sfri_R0009 - 12 Thr tRNA
151853 151937 + 85 114561188 Sfri_R0010 - 18 Tyr tRNA
151973 152046 + 74 114561188 Sfri_R0011 - 01 Gly tRNA
152056 152131 + 76 114561188 Sfri_R0012 - 14 Ile tRNA
194560 196094 + 1535 114561188 Sfri_R0013 - 16S ribosomal RNA
196482 199397 + 2916 114561188 Sfri_R0014 - 23S ribosomal RNA
199536 199657 + 122 114561188 Sfri_R0015 - 5S ribosomal RNA
199760 199836 + 77 114561188 Sfri_R0016 - 06 Asp tRNA
420382 420681 + 300 114561188 Sfri_R0017 - RNA component of RNaseP
473790 473866 + 77 114561188 Sfri_R0018 - 11 Arg tRNA
473918 473993 + 76 114561188 Sfri_R0019 - 09 His tRNA
474015 474091 + 77 114561188 Sfri_R0020 - 03 Pro tRNA
474157 474233 + 77 114561188 Sfri_R0021 - 03 Pro tRNA
474297 474373 + 77 114561188 Sfri_R0022 - 03 Pro tRNA
575178 575262 + 85 114561188 Sfri_R0023 - 15 Leu tRNA
668906 669050 + 145 114561188 Sfri_R0024 -
777366 777452 - 87 114561188 Sfri_R0025 - 15 Leu tRNA
777512 777587 - 76 114561188 Sfri_R0026 - 17 Phe tRNA
785406 786940 + 1535 114561188 Sfri_R0027 - 16S ribosomal RNA
787328 790242 + 2915 114561188 Sfri_R0028 - 23S ribosomal RNA
790385 790506 + 122 114561188 Sfri_R0029 - 5S ribosomal RNA
793280 794814 + 1535 114561188 Sfri_R0030 - 16S ribosomal RNA
795202 798117 + 2916 114561188 Sfri_R0031 - 23S ribosomal RNA
798260 798381 + 122 114561188 Sfri_R0032 - 5S ribosomal RNA
800254 800330 + 77 114561188 Sfri_R0033 - 20 Trp tRNA
843284 843360 + 77 114561188 Sfri_R0034 - 16 Met tRNA
843406 843490 + 85 114561188 Sfri_R0035 - 15 Leu tRNA
843536 843610 + 75 114561188 Sfri_R0036 - 05 Gln tRNA
843634 843708 + 75 114561188 Sfri_R0037 - 05 Gln tRNA
843714 843790 + 77 114561188 Sfri_R0038 - 16 Met tRNA
843884 843968 + 85 114561188 Sfri_R0039 - 15 Leu tRNA
844017 844091 + 75 114561188 Sfri_R0040 - 05 Gln tRNA
1153446 1153532 + 87 114561188 Sfri_R0041 - 15 Leu tRNA
1153614 1153689 + 76 114561188 Sfri_R0042 - 16 Met tRNA
1160053 1160165 + 113 114561188 Sfri_R0043 -
1257132 1257223 + 92 114561188 Sfri_R0044 - 08 Ser tRNA
1257246 1257322 + 77 114561188 Sfri_R0045 - 11 Arg tRNA
1257350 1257426 + 77 114561188 Sfri_R0046 - 11 Arg tRNA
1257455 1257531 + 77 114561188 Sfri_R0047 - 11 Arg tRNA
1257540 1257631 + 92 114561188 Sfri_R0048 - 08 Ser tRNA
1257705 1257781 + 77 114561188 Sfri_R0049 - 11 Arg tRNA
1293003 1293358 - 356 114561188 Sfri_R0050 - tmRNA
1363511 1363586 + 76 114561188 Sfri_R0051 - 11 Arg tRNA
1504073 1504225 + 153 114561188 Sfri_R0052 -
1715302 1715387 + 86 114561188 Sfri_R0053 - 15 Leu tRNA
1749039 1749114 + 76 114561188 Sfri_R0054 - 10 Lys tRNA
1749240 1749315 + 76 114561188 Sfri_R0055 - 10 Lys tRNA
1749441 1749516 + 76 114561188 Sfri_R0056 - 10 Lys tRNA
1749642 1749717 + 76 114561188 Sfri_R0057 - 10 Lys tRNA
1749843 1749918 + 76 114561188 Sfri_R0058 - 10 Lys tRNA
1750044 1750119 + 76 114561188 Sfri_R0059 - 10 Lys tRNA
1818512 1818619 + 108 114561188 Sfri_R0060 -
1849550 1851084 + 1535 114561188 Sfri_R0061 - 16S ribosomal RNA
1851303 1851379 + 77 114561188 Sfri_R0062 - 14 Ile tRNA
1851529 1851604 + 76 114561188 Sfri_R0063 - 02 Ala tRNA
1851941 1854856 + 2916 114561188 Sfri_R0064 - 23S ribosomal RNA
1855054 1855175 + 122 114561188 Sfri_R0065 - 5S ribosomal RNA
2127062 2127151 + 90 114561188 Sfri_R0066 - 08 Ser tRNA
2222173 2222257 - 85 114561188 Sfri_R0067 - 18 Tyr tRNA
2222288 2222372 - 85 114561188 Sfri_R0068 - 18 Tyr tRNA
2222460 2222544 - 85 114561188 Sfri_R0069 - 18 Tyr tRNA
2306048 2306123 + 76 114561188 Sfri_R0070 - 01 Gly tRNA
2306166 2306239 + 74 114561188 Sfri_R0071 - 19 Cys tRNA
2306289 2306374 + 86 114561188 Sfri_R0072 - 15 Leu tRNA
2404762 2404838 + 77 114561188 Sfri_R0073 - 13 Val tRNA
2404887 2404963 + 77 114561188 Sfri_R0074 - 13 Val tRNA
2563286 2563375 - 90 114561188 Sfri_R0075 - 08 Ser tRNA
2596094 2596169 + 76 114561188 Sfri_R0076 - 07 Asn tRNA
2596203 2596278 + 76 114561188 Sfri_R0077 - 07 Asn tRNA
2596302 2596377 + 76 114561188 Sfri_R0078 - 07 Asn tRNA
2596407 2596482 + 76 114561188 Sfri_R0079 - 07 Asn tRNA
2596516 2596591 + 76 114561188 Sfri_R0080 - 07 Asn tRNA
2632886 2632985 - 100 114561188 Sfri_R0081 -
2636128 2636204 - 77 114561188 Sfri_R0082 - 06 Asp tRNA
2636285 2636361 - 77 114561188 Sfri_R0083 - 06 Asp tRNA
2981097 2981173 + 77 114561188 Sfri_R0084 - 03 Pro tRNA
3107614 3107689 - 76 114561188 Sfri_R0085 - 09 His tRNA
3107698 3107774 - 77 114561188 Sfri_R0086 - 11 Arg tRNA
3107860 3107936 - 77 114561188 Sfri_R0087 - 03 Pro tRNA
3154683 3154797 - 115 114561188 Sfri_R0088 - SRP RNA; RNA component of signal recognition particle
3174166 3174251 - 86 114561188 Sfri_R0089 - 15 Leu tRNA
3174301 3174374 - 74 114561188 Sfri_R0090 - 19 Cys tRNA
3174416 3174491 - 76 114561188 Sfri_R0091 - 01 Gly tRNA
3187709 3187798 - 90 114561188 Sfri_R0092 - 08 Ser tRNA
3197419 3197494 + 76 114561188 Sfri_R0093 - 16 Met tRNA
3197540 3197615 + 76 114561188 Sfri_R0094 - 16 Met tRNA
3197661 3197736 + 76 114561188 Sfri_R0095 - 16 Met tRNA
3197783 3197858 + 76 114561188 Sfri_R0096 - 16 Met tRNA
3198189 3198264 + 76 114561188 Sfri_R0097 - 16 Met tRNA
3261000 3261075 - 76 114561188 Sfri_R0098 - 13 Val tRNA
3261110 3261185 - 76 114561188 Sfri_R0099 - 13 Val tRNA
3261213 3261288 - 76 114561188 Sfri_R0100 - 13 Val tRNA
3261330 3261405 - 76 114561188 Sfri_R0101 - 13 Val tRNA
3261438 3261513 - 76 114561188 Sfri_R0102 - 13 Val tRNA
3261553 3261628 - 76 114561188 Sfri_R0103 - 13 Val tRNA
3263399 3263474 + 76 114561188 Sfri_R0104 - 02 Ala tRNA
3263753 3263828 + 76 114561188 Sfri_R0105 - 04 Glu tRNA
3263961 3264036 + 76 114561188 Sfri_R0106 - 04 Glu tRNA
3264347 3264422 + 76 114561188 Sfri_R0107 - 04 Glu tRNA
3264555 3264630 + 76 114561188 Sfri_R0108 - 04 Glu tRNA
3264762 3264837 + 76 114561188 Sfri_R0109 - 04 Glu tRNA
3264970 3265045 + 76 114561188 Sfri_R0110 - 04 Glu tRNA
3265082 3265157 + 76 114561188 Sfri_R0111 - 02 Ala tRNA
3459744 3459819 + 76 114561188 Sfri_R0112 - 17 Phe tRNA
3459826 3459901 + 76 114561188 Sfri_R0113 - 12 Thr tRNA
3597796 3597872 + 77 114561188 Sfri_R0114 - 16 Met tRNA
3963093 3963168 - 76 114561188 Sfri_R0115 - 01 Gly tRNA
3963272 3963347 - 76 114561188 Sfri_R0116 - 01 Gly tRNA
3963441 3963516 - 76 114561188 Sfri_R0117 - 01 Gly tRNA
4291949 4292038 + 90 114561188 Sfri_R0118 - 08 Ser tRNA
4512241 4512362 - 122 114561188 Sfri_R0119 - 5S ribosomal RNA
4512505 4515420 - 2916 114561188 Sfri_R0120 - 23S ribosomal RNA
4515808 4517342 - 1535 114561188 Sfri_R0121 - 16S ribosomal RNA
4519940 4520061 - 122 114561188 Sfri_R0122 - 5S ribosomal RNA
4520094 4520169 - 76 114561188 Sfri_R0123 - 12 Thr tRNA
4520196 4520317 - 122 114561188 Sfri_R0124 - 5S ribosomal RNA
4520460 4523375 - 2916 114561188 Sfri_R0125 - 23S ribosomal RNA
4523711 4523786 - 76 114561188 Sfri_R0126 - 02 Ala tRNA
4523920 4523996 - 77 114561188 Sfri_R0127 - 14 Ile tRNA
4524086 4525620 - 1535 114561188 Sfri_R0128 - 16S ribosomal RNA
4620263 4620432 + 170 114561188 Sfri_R0129 -
4799016 4799092 - 77 114561188 Sfri_R0130 - 06 Asp tRNA
4799195 4799316 - 122 114561188 Sfri_R0131 - 5S ribosomal RNA
4799459 4802374 - 2916 114561188 Sfri_R0132 - 23S ribosomal RNA
4802761 4804295 - 1535 114561188 Sfri_R0133 - 16S ribosomal RNA