Материалы:NC 008700

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   LOCUS       NC_008700            4306142 bp    DNA     circular BCT 21-DEC-2006
   DEFINITION  Shewanella amazonensis SB2B, complete genome.
   ACCESSION   NC_008700
   VERSION     NC_008700.1  GI:119773142
   KEYWORDS    .
   SOURCE      Shewanella amazonensis SB2B
     ORGANISM  Shewanella amazonensis SB2B
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4306142)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Fredrickson,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella amazonensis SB2B
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4306142)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4306142)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Munk,A.C., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P.,
               Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Mikhailova,N., Fredrickson,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000507.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  3634604
               Source DNA and bacteria available from Jim Fredrickson
               (Jim.fredrickson@pnl.gov)
               Contacts: Jim Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
56157 57693 + 1537 119773142 Sama_R0001 - 16S ribosomal RNA
57960 60873 + 2914 119773142 Sama_R0002 - 23S ribosomal RNA
61045 61160 + 116 119773142 Sama_R0003 - 5S ribosomal RNA
224354 225890 + 1537 119773142 Sama_R0004 - 16S ribosomal RNA
225961 226037 + 77 119773142 Sama_R0005 - 14 Ile tRNA
226157 226232 + 76 119773142 Sama_R0006 - 02 Ala tRNA
226509 229422 + 2914 119773142 Sama_R0007 - 23S ribosomal RNA
229488 229563 + 76 119773142 Sama_R0008 - 13 Val tRNA
229630 229745 + 116 119773142 Sama_R0009 - 5S ribosomal RNA
233136 233211 + 76 119773142 Sama_R0010 - 12 Thr tRNA
233219 233303 + 85 119773142 Sama_R0011 - 18 Tyr tRNA
233339 233412 + 74 119773142 Sama_R0012 - 01 Gly tRNA
233426 233501 + 76 119773142 Sama_R0013 - 12 Thr tRNA
275883 277419 + 1537 119773142 Sama_R0014 - 16S ribosomal RNA
277686 280599 + 2914 119773142 Sama_R0015 - 23S ribosomal RNA
280666 280741 + 76 119773142 Sama_R0016 - 13 Val tRNA
280810 280925 + 116 119773142 Sama_R0017 - 5S ribosomal RNA
280949 281025 + 77 119773142 Sama_R0018 - 06 Asp tRNA
282826 284362 + 1537 119773142 Sama_R0019 - 16S ribosomal RNA
284629 287542 + 2914 119773142 Sama_R0020 - 23S ribosomal RNA
287714 287829 + 116 119773142 Sama_R0021 - 5S ribosomal RNA
436076 437612 + 1537 119773142 Sama_R0022 - 16S ribosomal RNA
437683 437759 + 77 119773142 Sama_R0023 - 14 Ile tRNA
437879 437954 + 76 119773142 Sama_R0024 - 02 Ala tRNA
438231 441144 + 2914 119773142 Sama_R0025 - 23S ribosomal RNA
441211 441286 + 76 119773142 Sama_R0026 - 13 Val tRNA
441353 441468 + 116 119773142 Sama_R0027 - 5S ribosomal RNA
441514 441589 + 76 119773142 Sama_R0028 - 12 Thr tRNA
441632 441746 + 115 119773142 Sama_R0029 - 5S ribosomal RNA
680733 680819 + 87 119773142 Sama_R0031 - 15 Leu tRNA
1006573 1006649 - 77 119773142 Sama_R0032 - 16 Met tRNA
1149697 1149772 - 76 119773142 Sama_R0033 - 12 Thr tRNA
1149781 1149856 - 76 119773142 Sama_R0034 - 17 Phe tRNA
1158691 1158777 + 87 119773142 Sama_R0035 - 15 Leu tRNA
1158857 1158933 + 77 119773142 Sama_R0036 - 16 Met tRNA
1165215 1165328 + 114 119773142 Sama_R0037 - ribosomal S15 leader
1271639 1271730 + 92 119773142 Sama_R0038 - 08 Ser tRNA
1271754 1271830 + 77 119773142 Sama_R0039 - 11 Arg tRNA
1271866 1271942 + 77 119773142 Sama_R0040 - 11 Arg tRNA
1271975 1272051 + 77 119773142 Sama_R0041 - 11 Arg tRNA
1272091 1272167 + 77 119773142 Sama_R0042 - 11 Arg tRNA
1272197 1272273 + 77 119773142 Sama_R0043 - 11 Arg tRNA
1272281 1272372 + 92 119773142 Sama_R0044 - 08 Ser tRNA
1272419 1272495 + 77 119773142 Sama_R0045 - 11 Arg tRNA
1504419 1504495 + 77 119773142 Sama_R0046 - 03 Pro tRNA
1504560 1504636 + 77 119773142 Sama_R0047 - 11 Arg tRNA
1504649 1504724 + 76 119773142 Sama_R0048 - 09 His tRNA
1528004 1528118 + 115 119773142 Sama_R0049 - SRP RNA; RNA component of signal recognition particle
1867547 1869083 + 1537 119773142 Sama_R0050 - 16S ribosomal RNA
1869154 1869230 + 77 119773142 Sama_R0051 - 14 Ile tRNA
1869351 1869426 + 76 119773142 Sama_R0052 - 02 Ala tRNA
1869703 1872616 + 2914 119773142 Sama_R0053 - 23S ribosomal RNA
1872787 1872902 + 116 119773142 Sama_R0054 - 5S ribosomal RNA
1894753 1894829 - 77 119773142 Sama_R0055 - 03 Pro tRNA
1954117 1954193 - 77 119773142 Sama_R0056 - 16 Met tRNA
1954236 1954312 - 77 119773142 Sama_R0057 - 16 Met tRNA
1954355 1954431 - 77 119773142 Sama_R0058 - 16 Met tRNA
1963948 1964038 + 91 119773142 Sama_R0059 - 08 Ser tRNA
1964400 1964490 + 91 119773142 Sama_R0060 - 08 Ser tRNA
1968083 1968158 + 76 119773142 Sama_R0061 - 01 Gly tRNA
1968189 1968262 + 74 119773142 Sama_R0062 - 19 Cys tRNA
1968301 1968387 + 87 119773142 Sama_R0063 - 15 Leu tRNA
2096231 2096318 + 88 119773142 Sama_R0064 - 08 Ser tRNA
2138789 2138865 - 77 119773142 Sama_R0065 - 03 Pro tRNA
2156072 2156148 - 77 119773142 Sama_R0066 - 13 Val tRNA
2156188 2156264 - 77 119773142 Sama_R0067 - 13 Val tRNA
2197974 2198047 - 74 119773142 Sama_R0068 - 19 Cys tRNA
2198068 2198143 - 76 119773142 Sama_R0069 - 01 Gly tRNA
2220380 2220464 + 85 119773142 Sama_R0070 - 18 Tyr tRNA
2220502 2220586 + 85 119773142 Sama_R0071 - 18 Tyr tRNA
2220614 2220698 + 85 119773142 Sama_R0072 - 18 Tyr tRNA
2227039 2227114 + 76 119773142 Sama_R0073 - 07 Asn tRNA
2227163 2227238 + 76 119773142 Sama_R0074 - 07 Asn tRNA
2227262 2227337 + 76 119773142 Sama_R0075 - 07 Asn tRNA
2227361 2227436 + 76 119773142 Sama_R0076 - 07 Asn tRNA
2227460 2227535 + 76 119773142 Sama_R0077 - 07 Asn tRNA
2294530 2294606 - 77 119773142 Sama_R0078 - 06 Asp tRNA
2527293 2527368 - 76 119773142 Sama_R0079 - 10 Lys tRNA
2527410 2527485 - 76 119773142 Sama_R0080 - 10 Lys tRNA
2527525 2527600 - 76 119773142 Sama_R0081 - 10 Lys tRNA
2527635 2527710 - 76 119773142 Sama_R0082 - 10 Lys tRNA
2527750 2527825 - 76 119773142 Sama_R0083 - 10 Lys tRNA
2527853 2527928 - 76 119773142 Sama_R0084 - 10 Lys tRNA
2527965 2528040 - 76 119773142 Sama_R0085 - 10 Lys tRNA
2528064 2528139 - 76 119773142 Sama_R0086 - 10 Lys tRNA
2666313 2666388 - 76 119773142 Sama_R0087 - 02 Ala tRNA
2666426 2666501 - 76 119773142 Sama_R0088 - 04 Glu tRNA
2666536 2666611 - 76 119773142 Sama_R0089 - 02 Ala tRNA
2666649 2666724 - 76 119773142 Sama_R0090 - 04 Glu tRNA
2666759 2666834 - 76 119773142 Sama_R0091 - 02 Ala tRNA
2666949 2667024 - 76 119773142 Sama_R0092 - 04 Glu tRNA
2667059 2667134 - 76 119773142 Sama_R0093 - 02 Ala tRNA
2667172 2667247 - 76 119773142 Sama_R0094 - 04 Glu tRNA
2667284 2667359 - 76 119773142 Sama_R0095 - 04 Glu tRNA
2667523 2667598 - 76 119773142 Sama_R0096 - 04 Glu tRNA
2667635 2667710 - 76 119773142 Sama_R0097 - 04 Glu tRNA
2667727 2667802 - 76 119773142 Sama_R0098 - 02 Ala tRNA
2790511 2790586 + 76 119773142 Sama_R0099 - 11 Arg tRNA
2868249 2868601 + 353 119773142 Sama_R0100 - tmRNA
3077424 3077498 - 75 119773142 Sama_R0101 - 05 Gln tRNA
3077543 3077619 - 77 119773142 Sama_R0102 - 16 Met tRNA
3077621 3077695 - 75 119773142 Sama_R0103 - 05 Gln tRNA
3077718 3077792 - 75 119773142 Sama_R0104 - 05 Gln tRNA
3077832 3077916 - 85 119773142 Sama_R0105 - 15 Leu tRNA
3077946 3078022 - 77 119773142 Sama_R0106 - 16 Met tRNA
3104987 3105063 - 77 119773142 Sama_R0107 - 20 Trp tRNA
3107019 3107095 - 77 119773142 Sama_R0108 - 06 Asp tRNA
3107119 3107234 - 116 119773142 Sama_R0109 - 5S ribosomal RNA
3107352 3107427 - 76 119773142 Sama_R0110 - 13 Val tRNA
3107493 3110406 - 2914 119773142 Sama_R0111 - 23S ribosomal RNA
3110673 3112209 - 1537 119773142 Sama_R0112 - 16S ribosomal RNA
3120564 3120639 + 76 119773142 Sama_R0113 - 17 Phe tRNA
3120692 3120778 + 87 119773142 Sama_R0114 - 15 Leu tRNA
3120816 3120902 + 87 119773142 Sama_R0115 - 15 Leu tRNA
3120933 3121019 + 87 119773142 Sama_R0116 - 15 Leu tRNA
3607448 3607523 - 76 119773142 Sama_R0118 - 01 Gly tRNA
3607557 3607632 - 76 119773142 Sama_R0119 - 01 Gly tRNA
3607666 3607741 - 76 119773142 Sama_R0120 - 01 Gly tRNA
3607775 3607850 - 76 119773142 Sama_R0121 - 01 Gly tRNA
3607884 3607959 - 76 119773142 Sama_R0122 - 01 Gly tRNA
3874396 3874472 - 77 119773142 Sama_R0123 - 03 Pro tRNA
3874550 3874626 - 77 119773142 Sama_R0124 - 03 Pro tRNA
3874650 3874725 - 76 119773142 Sama_R0125 - 09 His tRNA
3874761 3874837 - 77 119773142 Sama_R0126 - 11 Arg tRNA
3980859 3981162 - 304 119773142 Sama_R0127 - RNA component of RNaseP
4109629 4109702 - 74 119773142 Sama_R0128 - 01 Gly tRNA
4277026 4277102 - 77 119773142 Sama_R0129 - 06 Asp tRNA
4277126 4277241 - 116 119773142 Sama_R0130 - 5S ribosomal RNA
4277413 4280326 - 2914 119773142 Sama_R0131 - 23S ribosomal RNA
4280593 4282129 - 1537 119773142 Sama_R0132 - 16S ribosomal RNA