Геном прокариот/Материалы:NC 008726

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008726            6491865 bp    DNA     circular BCT 29-DEC-2006
   DEFINITION  Mycobacterium vanbaalenii PYR-1, complete genome.
   ACCESSION   NC_008726
   VERSION     NC_008726.1  GI:120401028
   KEYWORDS    .
   SOURCE      Mycobacterium vanbaalenii PYR-1
     ORGANISM  Mycobacterium vanbaalenii PYR-1
               Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
               Corynebacterineae; Mycobacteriaceae; Mycobacterium.
   REFERENCE   1  (bases 1 to 6491865)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Anderson,I.J., Miller,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Mycobacterium vanbaalenii PYR-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6491865)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (28-DEC-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6491865)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Singan,V., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N.,
               Anderson,I.J., Miller,C. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000511.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  4000382
               Source DNA and bacteria available from Charles Miller
               (cdmiller@biology.usu.edu)
               Contacts: Charles Miller (cdmiller@biology.usu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-PGF
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
13216	13289	+	74	120401028	Mvan_R0001	-	^{14 Ile tRNA}
13436	13511	+	76	120401028	Mvan_R0002	-	^{02 Ala tRNA}
36595	36677	+	83	120401028	Mvan_R0003	-	^{15 Leu tRNA}
494275	494340	-	66	120401028	Mvan_R0006	-	^{08 Ser tRNA}
629824	629897	-	74	120401028	Mvan_R0007	-	^{01 Gly tRNA}
1025690	1025772	+	83	120401028	Mvan_R0009	-	^{18 Tyr tRNA}
1316426	1316498	+	73	120401028	Mvan_R0010	-	^{12 Thr tRNA}
1316550	1316623	+	74	120401028	Mvan_R0011	-	^{16 Met tRNA}
1318476	1318548	+	73	120401028	Mvan_R0012	-	^{20 Trp tRNA}
1937234	1937310	+	77	120401028	Mvan_R0013	-	^{16 Met tRNA}
2047377	2047742	+	366	120401028	Mvan_R0014	-
2086423	2086498	+	76	120401028	Mvan_R0015	-	^{02 Ala tRNA}
2277882	2277956	+	75	120401028	Mvan_R0016	-	^{05 Gln tRNA}
2278020	2278095	+	76	120401028	Mvan_R0017	-	^{04 Glu tRNA}
2666393	2666467	-	75	120401028	Mvan_R0018	-	^{13 Val tRNA}
2666479	2666552	-	74	120401028	Mvan_R0019	-	^{19 Cys tRNA}
2666576	2666651	-	76	120401028	Mvan_R0020	-	^{01 Gly tRNA}
2667379	2667453	+	75	120401028	Mvan_R0021	-	^{13 Val tRNA}
3013083	3013159	-	77	120401028	Mvan_R0022	-	^{15 Leu tRNA}
3434315	3434399	+	85	120401028	Mvan_R0023	-	^{16 Met tRNA}
3478452	3478528	-	77	120401028	Mvan_R0024	-	^{03 Pro tRNA}
3500936	3501048	-	113	120401028	Mvan_R0025	-	5S ribosomal RNA
3501139	3504292	-	3154	120401028	Mvan_R0026	-	23S ribosomal RNA
3504692	3506206	-	1515	120401028	Mvan_R0027	-	16S ribosomal RNA
3563881	3563951	-	71	120401028	Mvan_R0028	-	^{19 Cys tRNA}
3705136	3705224	+	89	120401028	Mvan_R0029	-	^{15 Leu tRNA}
3845397	3845765	-	369	120401028	Mvan_R0030	-	RNA component of RNaseP
3988608	3988682	-	75	120401028	Mvan_R0031	-	^{13 Val tRNA}
4049352	4049425	-	74	120401028	Mvan_R0032	-	^{16 Met tRNA}
4062796	4062871	-	76	120401028	Mvan_R0033	-	^{07 Asn tRNA}
4324160	4324236	-	77	120401028	Mvan_R0034	-	^{03 Pro tRNA}
4324373	4324446	+	74	120401028	Mvan_R0035	-	^{01 Gly tRNA}
4368107	4368179	+	73	120401028	Mvan_R0036	-	^{11 Arg tRNA}
4393960	4394035	+	76	120401028	Mvan_R0037	-	^{09 His tRNA}
4395842	4395917	+	76	120401028	Mvan_R0038	-	^{10 Lys tRNA}
4590937	4591019	-	83	120401028	Mvan_R0039	-	^{15 Leu tRNA}
4634040	4634152	-	113	120401028	Mvan_R0040	-	5S ribosomal RNA
4634243	4637396	-	3154	120401028	Mvan_R0041	-	23S ribosomal RNA
4637795	4639309	-	1515	120401028	Mvan_R0042	-	16S ribosomal RNA
4667130	4667205	+	76	120401028	Mvan_R0043	-	^{11 Arg tRNA}
5081911	5081984	-	74	120401028	Mvan_R0045	-	^{15 Leu tRNA}
5121881	5121952	+	72	120401028	Mvan_R0046	-	^{05 Gln tRNA}
5168125	5168197	-	73	120401028	Mvan_R0047	-	^{02 Ala tRNA}
5280480	5280552	+	73	120401028	Mvan_R0048	-	^{11 Arg tRNA}
5446204	5446280	-	77	120401028	Mvan_R0050	-	^{17 Phe tRNA}
5446322	5446398	-	77	120401028	Mvan_R0051	-	^{06 Asp tRNA}
5446436	5446508	-	73	120401028	Mvan_R0052	-	^{04 Glu tRNA}
5446639	5446714	+	76	120401028	Mvan_R0053	-	^{10 Lys tRNA}
5540909	5540983	+	75	120401028	Mvan_R0054	-	^{12 Thr tRNA}
5774047	5774122	-	76	120401028	Mvan_R0056	-	^{12 Thr tRNA}
5824010	5824083	+	74	120401028	Mvan_R0057	-	^{03 Pro tRNA}
5916780	5916872	-	93	120401028	Mvan_R0058	-	SRP RNA; RNA component of signal recognition particle
5916968	5917053	+	86	120401028	Mvan_R0059	-	^{08 Ser tRNA}
5973771	5973861	-	91	120401028	Mvan_R0060	-	^{08 Ser tRNA}
5988436	5988508	-	73	120401028	Mvan_R0061	-	^{11 Arg tRNA}
5988559	5988647	-	89	120401028	Mvan_R0062	-	^{08 Ser tRNA}
5991145	5991231	-	87	120401028	Mvan_R0063	-	^{08 Ser tRNA}
6252241	6252307	+	67	120401028	Mvan_R0064	-	^{14 Ile tRNA}