Материалы:NC 008750

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   LOCUS       NC_008750            4708380 bp    DNA     circular BCT 05-JAN-2007
   DEFINITION  Shewanella sp. W3-18-1, complete genome.
   ACCESSION   NC_008750
   VERSION     NC_008750.1  GI:120596833
   KEYWORDS    .
   SOURCE      Shewanella sp. W3-18-1
     ORGANISM  Shewanella sp. W3-18-1
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4708380)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Tiedje,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella sp. W3-18-1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4708380)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (04-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4708380)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Tiedje,J. and
               Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (13-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000503.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4000559
               Source DNA and bacteria available from James Tiedje
               (tiedjej@pilot.msu.edu)
               Contacts: James Tiedje (tiedjej@pilot.msu.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. it is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
38735	40269	+	1535	120596833	Sputw3181_R0001	-	16S ribosomal RNA
40645	43537	+	2893	120596833	Sputw3181_R0002	-	23S ribosomal RNA
43712	43827	+	116	120596833	Sputw3181_R0003	-	5S ribosomal RNA
171582	171657	+	76	120596833	Sputw3181_R0004	-	^{12 Thr tRNA}
171665	171749	+	85	120596833	Sputw3181_R0005	-	^{18 Tyr tRNA}
171786	171859	+	74	120596833	Sputw3181_R0006	-	^{01 Gly tRNA}
171869	171944	+	76	120596833	Sputw3181_R0007	-	^{12 Thr tRNA}
213887	215421	+	1535	120596833	Sputw3181_R0008	-	16S ribosomal RNA
215901	218793	+	2893	120596833	Sputw3181_R0009	-	23S ribosomal RNA
218976	219091	+	116	120596833	Sputw3181_R0010	-	5S ribosomal RNA
219128	219204	+	77	120596833	Sputw3181_R0011	-	^{06 Asp tRNA}
433939	435473	+	1535	120596833	Sputw3181_R0012	-	16S ribosomal RNA
435717	435793	+	77	120596833	Sputw3181_R0013	-	^{14 Ile tRNA}
435931	436006	+	76	120596833	Sputw3181_R0014	-	^{02 Ala tRNA}
436447	439339	+	2893	120596833	Sputw3181_R0015	-	23S ribosomal RNA
439570	439685	+	116	120596833	Sputw3181_R0016	-	5S ribosomal RNA
720617	720692	+	76	120596833	Sputw3181_R0017	-	^{01 Gly tRNA}
720814	720889	+	76	120596833	Sputw3181_R0018	-	^{01 Gly tRNA}
720932	721007	+	76	120596833	Sputw3181_R0019	-	^{01 Gly tRNA}
721014	721089	+	76	120596833	Sputw3181_R0020	-	^{01 Gly tRNA}
1164216	1164292	+	77	120596833	Sputw3181_R0021	-	^{20 Trp tRNA}
1197325	1197401	+	77	120596833	Sputw3181_R0022	-	^{16 Met tRNA}
1197472	1197556	+	85	120596833	Sputw3181_R0023	-	^{15 Leu tRNA}
1197605	1197679	+	75	120596833	Sputw3181_R0024	-	^{05 Gln tRNA}
1197702	1197776	+	75	120596833	Sputw3181_R0025	-	^{05 Gln tRNA}
1197779	1197855	+	77	120596833	Sputw3181_R0026	-	^{16 Met tRNA}
1197938	1198022	+	85	120596833	Sputw3181_R0027	-	^{15 Leu tRNA}
1198066	1198140	+	75	120596833	Sputw3181_R0028	-	^{05 Gln tRNA}
1212941	1213027	+	87	120596833	Sputw3181_R0029	-	^{15 Leu tRNA}
1213110	1213186	+	77	120596833	Sputw3181_R0030	-	^{16 Met tRNA}
1219555	1219667	+	113	120596833	Sputw3181_R0031	-
1445268	1445359	+	92	120596833	Sputw3181_R0032	-	^{08 Ser tRNA}
1445382	1445458	+	77	120596833	Sputw3181_R0033	-	^{11 Arg tRNA}
1445483	1445559	+	77	120596833	Sputw3181_R0034	-	^{11 Arg tRNA}
1445647	1445723	+	77	120596833	Sputw3181_R0035	-	^{11 Arg tRNA}
1445766	1445842	+	77	120596833	Sputw3181_R0036	-	^{11 Arg tRNA}
1445887	1445963	+	77	120596833	Sputw3181_R0037	-	^{11 Arg tRNA}
1445999	1446090	+	92	120596833	Sputw3181_R0038	-	^{08 Ser tRNA}
1446188	1446264	+	77	120596833	Sputw3181_R0039	-	^{11 Arg tRNA}
1491320	1491395	-	76	120596833	Sputw3181_R0040	-	^{12 Thr tRNA}
1491440	1491515	-	76	120596833	Sputw3181_R0041	-	^{17 Phe tRNA}
1492002	1492077	-	76	120596833	Sputw3181_R0042	-	^{12 Thr tRNA}
1492122	1492197	-	76	120596833	Sputw3181_R0043	-	^{17 Phe tRNA}
1586838	1586913	-	76	120596833	Sputw3181_R0044	-	^{11 Arg tRNA}
1710347	1710422	-	76	120596833	Sputw3181_R0045	-	^{13 Val tRNA}
1710451	1710526	-	76	120596833	Sputw3181_R0046	-	^{13 Val tRNA}
1710572	1710647	-	76	120596833	Sputw3181_R0047	-	^{13 Val tRNA}
1710685	1710760	-	76	120596833	Sputw3181_R0048	-	^{13 Val tRNA}
1710805	1710880	-	76	120596833	Sputw3181_R0049	-	^{13 Val tRNA}
1712809	1712884	+	76	120596833	Sputw3181_R0050	-	^{02 Ala tRNA}
1712960	1713035	+	76	120596833	Sputw3181_R0051	-	^{04 Glu tRNA}
1713150	1713225	+	76	120596833	Sputw3181_R0052	-	^{02 Ala tRNA}
1713391	1713466	+	76	120596833	Sputw3181_R0053	-	^{04 Glu tRNA}
1713599	1713674	+	76	120596833	Sputw3181_R0054	-	^{04 Glu tRNA}
1713898	1713973	+	76	120596833	Sputw3181_R0055	-	^{04 Glu tRNA}
1714197	1714272	+	76	120596833	Sputw3181_R0056	-	^{04 Glu tRNA}
1714509	1714584	+	76	120596833	Sputw3181_R0057	-	^{04 Glu tRNA}
1714716	1714791	+	76	120596833	Sputw3181_R0058	-	^{04 Glu tRNA}
1899549	1901083	+	1535	120596833	Sputw3181_R0059	-	16S ribosomal RNA
1901327	1901403	+	77	120596833	Sputw3181_R0060	-	^{14 Ile tRNA}
1901541	1901616	+	76	120596833	Sputw3181_R0061	-	^{02 Ala tRNA}
1902060	1904952	+	2893	120596833	Sputw3181_R0062	-	23S ribosomal RNA
1905197	1905312	+	116	120596833	Sputw3181_R0063	-	5S ribosomal RNA
1974623	1974699	+	77	120596833	Sputw3181_R0064	-	^{03 Pro tRNA}
2307150	2307226	-	77	120596833	Sputw3181_R0065	-	^{13 Val tRNA}
2307279	2307355	-	77	120596833	Sputw3181_R0066	-	^{13 Val tRNA}
2328430	2328520	+	91	120596833	Sputw3181_R0067	-	^{08 Ser tRNA}
2437783	2437869	-	87	120596833	Sputw3181_R0068	-	^{15 Leu tRNA}
2437920	2437993	-	74	120596833	Sputw3181_R0069	-	^{19 Cys tRNA}
2438047	2438122	-	76	120596833	Sputw3181_R0070	-	^{01 Gly tRNA}
2480765	2480849	+	85	120596833	Sputw3181_R0071	-	^{18 Tyr tRNA}
2480905	2480989	+	85	120596833	Sputw3181_R0072	-	^{18 Tyr tRNA}
2481092	2481176	+	85	120596833	Sputw3181_R0073	-	^{18 Tyr tRNA}
2486507	2486582	+	76	120596833	Sputw3181_R0074	-	^{07 Asn tRNA}
2486644	2486719	+	76	120596833	Sputw3181_R0075	-	^{07 Asn tRNA}
2486763	2486838	+	76	120596833	Sputw3181_R0076	-	^{07 Asn tRNA}
2486882	2486957	+	76	120596833	Sputw3181_R0077	-	^{07 Asn tRNA}
2487004	2487079	+	76	120596833	Sputw3181_R0078	-	^{07 Asn tRNA}
2555195	2555282	-	88	120596833	Sputw3181_R0079	-	^{08 Ser tRNA}
2591196	2591272	-	77	120596833	Sputw3181_R0080	-	^{06 Asp tRNA}
2591423	2591499	-	77	120596833	Sputw3181_R0081	-	^{06 Asp tRNA}
2746674	2746760	-	87	120596833	Sputw3181_R0082	-	^{15 Leu tRNA}
2746876	2746962	-	87	120596833	Sputw3181_R0083	-	^{15 Leu tRNA}
2747013	2747086	-	74	120596833	Sputw3181_R0084	-	^{19 Cys tRNA}
2747140	2747215	-	76	120596833	Sputw3181_R0085	-	^{01 Gly tRNA}
2750989	2751079	-	91	120596833	Sputw3181_R0086	-	^{08 Ser tRNA}
2751424	2751514	-	91	120596833	Sputw3181_R0087	-	^{08 Ser tRNA}
2760958	2761034	+	77	120596833	Sputw3181_R0088	-	^{16 Met tRNA}
2761076	2761152	+	77	120596833	Sputw3181_R0089	-	^{16 Met tRNA}
2761392	2761468	+	77	120596833	Sputw3181_R0090	-	^{16 Met tRNA}
2761610	2761686	+	77	120596833	Sputw3181_R0091	-	^{16 Met tRNA}
2784890	2784965	-	76	120596833	Sputw3181_R0092	-	^{10 Lys tRNA}
2785024	2785099	-	76	120596833	Sputw3181_R0093	-	^{10 Lys tRNA}
2785156	2785231	-	76	120596833	Sputw3181_R0094	-	^{10 Lys tRNA}
2785290	2785365	-	76	120596833	Sputw3181_R0095	-	^{10 Lys tRNA}
2785404	2785479	-	76	120596833	Sputw3181_R0096	-	^{10 Lys tRNA}
2785539	2785614	-	76	120596833	Sputw3181_R0097	-	^{10 Lys tRNA}
2954202	2954318	-	117	120596833	Sputw3181_R0098	-	SRP RNA; RNA component of signal recognition particle
2978067	2978142	-	76	120596833	Sputw3181_R0099	-	^{09 His tRNA}
2978152	2978228	-	77	120596833	Sputw3181_R0100	-	^{11 Arg tRNA}
2978338	2978414	-	77	120596833	Sputw3181_R0101	-	^{03 Pro tRNA}
3307738	3308090	+	353	120596833	Sputw3181_R0102	-	tmRNA
3490170	3490246	+	77	120596833	Sputw3181_R0103	-	^{16 Met tRNA}
3585958	3586073	-	116	120596833	Sputw3181_R0104	-	5S ribosomal RNA
3586254	3589146	-	2893	120596833	Sputw3181_R0105	-	23S ribosomal RNA
3589475	3591009	-	1535	120596833	Sputw3181_R0106	-	16S ribosomal RNA
3598840	3598915	+	76	120596833	Sputw3181_R0107	-	^{17 Phe tRNA}
3598970	3599056	+	87	120596833	Sputw3181_R0108	-	^{15 Leu tRNA}
3599125	3599211	+	87	120596833	Sputw3181_R0109	-	^{15 Leu tRNA}
3879529	3879615	+	87	120596833	Sputw3181_R0111	-	^{15 Leu tRNA}
4194891	4195006	-	116	120596833	Sputw3181_R0112	-	5S ribosomal RNA
4195044	4195119	-	76	120596833	Sputw3181_R0113	-	^{12 Thr tRNA}
4195193	4195308	-	116	120596833	Sputw3181_R0114	-	5S ribosomal RNA
4195532	4198424	-	2893	120596833	Sputw3181_R0115	-	23S ribosomal RNA
4198865	4198940	-	76	120596833	Sputw3181_R0116	-	^{02 Ala tRNA}
4199078	4199154	-	77	120596833	Sputw3181_R0117	-	^{14 Ile tRNA}
4199398	4200932	-	1535	120596833	Sputw3181_R0118	-	16S ribosomal RNA
4276230	4276306	-	77	120596833	Sputw3181_R0119	-	^{03 Pro tRNA}
4276459	4276535	-	77	120596833	Sputw3181_R0120	-	^{03 Pro tRNA}
4276752	4276827	-	76	120596833	Sputw3181_R0121	-	^{09 His tRNA}
4276880	4276956	-	77	120596833	Sputw3181_R0122	-	^{11 Arg tRNA}
4390092	4390389	-	298	120596833	Sputw3181_R0123	-	RNA component of RNaseP
4424069	4424184	-	116	120596833	Sputw3181_R0124	-	5S ribosomal RNA
4424365	4427257	-	2893	120596833	Sputw3181_R0125	-	23S ribosomal RNA
4427586	4429120	-	1535	120596833	Sputw3181_R0126	-	16S ribosomal RNA
4643017	4643093	-	77	120596833	Sputw3181_R0127	-	^{06 Asp tRNA}
4643130	4643245	-	116	120596833	Sputw3181_R0128	-	5S ribosomal RNA
4643420	4646312	-	2893	120596833	Sputw3181_R0129	-	23S ribosomal RNA
4646688	4648222	-	1535	120596833	Sputw3181_R0130	-	16S ribosomal RNA