Геном прокариот/Материалы:NC 008782

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_008782            4448856 bp    DNA     circular BCT 11-JAN-2007
   DEFINITION  Acidovorax sp. JS42, complete genome.
   ACCESSION   NC_008782
   VERSION     NC_008782.1  GI:121592436
   KEYWORDS    .
   SOURCE      Acidovorax sp. JS42
     ORGANISM  Acidovorax sp. JS42
               Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
               Comamonadaceae; Acidovorax.
   REFERENCE   1  (bases 1 to 4448856)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Chromosome1 of Acidovorax sp. JS42
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4448856)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (10-JAN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4448856)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T.,
               Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (21-DEC-2006) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000539.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4001426
               Source DNA and bacteria available from David Stahl
               (dastahl@u.washington.edu)
               Contacts: David Stahl (dastahl@u.washington.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК[править]

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
333762	333837	+	76	121592436	Ajs_R0001	-	^{11 Arg tRNA}
414117	414193	+	77	121592436	Ajs_R0002	-	^{16 Met tRNA}
836662	836737	+	76	121592436	Ajs_R0003	-	^{12 Thr tRNA}
887009	887085	-	77	121592436	Ajs_R0004	-	^{03 Pro tRNA}
944869	944945	-	77	121592436	Ajs_R0005	-	^{05 Gln tRNA}
992918	992994	-	77	121592436	Ajs_R0006	-	^{11 Arg tRNA}
998729	998813	+	85	121592436	Ajs_R0007	-	^{15 Leu tRNA}
1158744	1158831	-	88	121592436	Ajs_R0008	-	^{08 Ser tRNA}
1248578	1250099	+	1522	121592436	Ajs_R0009	-	16S ribosomal RNA
1250181	1250257	+	77	121592436	Ajs_R0010	-	^{14 Ile tRNA}
1250292	1250367	+	76	121592436	Ajs_R0011	-	^{02 Ala tRNA}
1250707	1253585	+	2879	121592436	Ajs_R0012	-	23S ribosomal RNA
1253703	1253815	+	113	121592436	Ajs_R0013	-	5S ribosomal RNA
1281620	1281706	+	87	121592436	Ajs_R0014	-	^{15 Leu tRNA}
1287848	1287923	+	76	121592436	Ajs_R0015	-	^{01 Gly tRNA}
1408450	1408523	+	74	121592436	Ajs_R0016	-	^{19 Cys tRNA}
1408638	1408713	+	76	121592436	Ajs_R0017	-	^{01 Gly tRNA}
1659919	1659994	+	76	121592436	Ajs_R0018	-	^{02 Ala tRNA}
1660026	1660101	+	76	121592436	Ajs_R0019	-	^{04 Glu tRNA}
1660159	1660235	+	77	121592436	Ajs_R0020	-	^{06 Asp tRNA}
1684418	1684510	+	93	121592436	Ajs_R0021	-	^{08 Ser tRNA}
1735478	1735554	+	77	121592436	Ajs_R0022	-	^{03 Pro tRNA}
1795778	1795853	+	76	121592436	Ajs_R0023	-	^{10 Lys tRNA}
1870836	1870925	+	90	121592436	Ajs_R0024	-	^{08 Ser tRNA}
2077471	2077544	-	74	121592436	Ajs_R0025	-	^{01 Gly tRNA}
2261208	2261282	-	75	121592436	Ajs_R0026	-	^{13 Val tRNA}
2261322	2261396	-	75	121592436	Ajs_R0027	-	^{13 Val tRNA}
2435001	2435076	+	76	121592436	Ajs_R0028	-	^{07 Asn tRNA}
2435129	2435204	+	76	121592436	Ajs_R0029	-	^{07 Asn tRNA}
2494212	2494312	+	101	121592436	Ajs_R0030	-	SRP RNA
2545780	2545856	-	77	121592436	Ajs_R0031	-	^{03 Pro tRNA}
2618142	2618517	-	376	121592436	Ajs_R0032	-	tmRNA
2734229	2734313	+	85	121592436	Ajs_R0033	-	^{15 Leu tRNA}
2734494	2734578	+	85	121592436	Ajs_R0034	-	^{15 Leu tRNA}
2779715	2779791	+	77	121592436	Ajs_R0035	-	^{11 Arg tRNA}
2791155	2791230	-	76	121592436	Ajs_R0036	-	^{09 His tRNA}
2793262	2793337	-	76	121592436	Ajs_R0037	-	^{13 Val tRNA}
2895213	2895289	-	77	121592436	Ajs_R0038	-	^{06 Asp tRNA}
2895336	2895411	-	76	121592436	Ajs_R0039	-	^{04 Glu tRNA}
2895444	2895519	-	76	121592436	Ajs_R0040	-	^{02 Ala tRNA}
2923874	2923949	+	76	121592436	Ajs_R0041	-	^{12 Thr tRNA}
3328249	3328325	-	77	121592436	Ajs_R0042	-	^{13 Val tRNA}
3523853	3523928	+	76	121592436	Ajs_R0043	-	^{10 Lys tRNA}
3633028	3633117	-	90	121592436	Ajs_R0044	-	^{08 Ser tRNA}
3754391	3754465	+	75	121592436	Ajs_R0045	-	^{11 Arg tRNA}
3828784	3828860	+	77	121592436	Ajs_R0046	-	^{16 Met tRNA}
3943283	3943561	-	279	121592436	Ajs_R0047	-	RNaseP RNA
4015747	4015879	-	133	121592436	Ajs_R0048	-	5S ribosomal RNA
4015997	4018875	-	2879	121592436	Ajs_R0049	-	23S ribosomal RNA
4019215	4019290	-	76	121592436	Ajs_R0050	-	^{02 Ala tRNA}
4019325	4019401	-	77	121592436	Ajs_R0051	-	^{14 Ile tRNA}
4019483	4021004	-	1522	121592436	Ajs_R0052	-	16S ribosomal RNA
4132026	4132101	-	76	121592436	Ajs_R0053	-	^{17 Phe tRNA}
4150130	4150205	-	76	121592436	Ajs_R0054	-	^{20 Trp tRNA}
4151487	4151561	-	75	121592436	Ajs_R0055	-	^{12 Thr tRNA}
4151603	4151676	-	74	121592436	Ajs_R0056	-	^{01 Gly tRNA}
4151725	4151810	-	86	121592436	Ajs_R0057	-	^{18 Tyr tRNA}
4153495	4153607	-	113	121592436	Ajs_R0058	-	5S ribosomal RNA
4153725	4156603	-	2879	121592436	Ajs_R0059	-	23S ribosomal RNA
4156943	4157018	-	76	121592436	Ajs_R0060	-	^{02 Ala tRNA}
4157053	4157129	-	77	121592436	Ajs_R0061	-	^{14 Ile tRNA}
4157211	4158732	-	1522	121592436	Ajs_R0062	-	16S ribosomal RNA
4301742	4301818	-	77	121592436	Ajs_R0064	-	^{11 Arg tRNA}