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Материалы:NC 009092

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   LOCUS       NC_009092            4602594 bp    DNA     circular BCT 14-AUG-2007
   DEFINITION  Shewanella loihica PV-4, complete genome.
   ACCESSION   NC_009092
   VERSION     NC_009092.1  GI:127510935
   KEYWORDS    .
   SOURCE      Shewanella loihica PV-4
     ORGANISM  Shewanella loihica PV-4
               Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
               Shewanellaceae; Shewanella.
   REFERENCE   1  (bases 1 to 4602594)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F.,
               Serres,G., Fredrickson,J., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Shewanella loihica PV-4
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 4602594)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (09-MAR-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4602594)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F.,
               Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Romine,M.F.,
               Serres,G., Fredrickson,J., Tiedje,J. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (05-MAR-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000606.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 3634499
               Source DNA and bacteria available from Jim Fredrickson
               (Jim.fredrickson@pnl.gov)
               Contacts: Shewanella Federation (shewanella.org)
                         James Tiedje (tiedjej@msu.edu)
                         Jim Fredrickson (Jim.fredrickson@pnl.gov)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LLNL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376)
               Additional Notes:There is one region (190008-190149) of the genome
               that was covered only by reads from the 454 sequencing machine.
               COMPLETENESS: full length.


Расположение РНК

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Начало Конец Направление Длина PID Ген COG Комментарий
151087 152641 + 1555 127510935 Shew_R0001 - 16S ribosomal RNA
152699 152775 + 77 127510935 Shew_R0002 - 14 Ile tRNA
152828 152903 + 76 127510935 Shew_R0003 - 02 Ala tRNA
153149 156041 + 2893 127510935 Shew_R0004 - 23S ribosomal RNA
156162 156282 + 121 127510935 Shew_R0005 - 5S ribosomal RNA
160440 160515 + 76 127510935 Shew_R0006 - 12 Thr tRNA
160523 160607 + 85 127510935 Shew_R0007 - 18 Tyr tRNA
160644 160717 + 74 127510935 Shew_R0008 - 01 Gly tRNA
203400 204956 + 1557 127510935 Shew_R0009 - 16S ribosomal RNA
205195 208087 + 2893 127510935 Shew_R0010 - 23S ribosomal RNA
208189 208309 + 121 127510935 Shew_R0011 - 5S ribosomal RNA
208343 208419 + 77 127510935 Shew_R0012 - 06 Asp tRNA
242495 242800 + 306 127510935 Shew_R0013 - RNA component of RNaseP
331983 332059 + 77 127510935 Shew_R0014 - 11 Arg tRNA
332103 332178 + 76 127510935 Shew_R0015 - 09 His tRNA
332263 332339 + 77 127510935 Shew_R0016 - 03 Pro tRNA
332392 332468 + 77 127510935 Shew_R0017 - 03 Pro tRNA
413069 413159 + 91 127510935 Shew_R0018 - 08 Ser tRNA
633941 634016 + 76 127510935 Shew_R0019 - 01 Gly tRNA
634062 634137 + 76 127510935 Shew_R0020 - 01 Gly tRNA
634145 634220 + 76 127510935 Shew_R0021 - 01 Gly tRNA
634229 634304 + 76 127510935 Shew_R0022 - 01 Gly tRNA
1153125 1153201 - 77 127510935 Shew_R0023 - 16 Met tRNA
1296009 1296084 - 76 127510935 Shew_R0024 - 12 Thr tRNA
1296092 1296167 - 76 127510935 Shew_R0025 - 17 Phe tRNA
1416121 1416212 + 92 127510935 Shew_R0026 - 08 Ser tRNA
1416234 1416310 + 77 127510935 Shew_R0027 - 11 Arg tRNA
1416348 1416424 + 77 127510935 Shew_R0028 - 11 Arg tRNA
1416450 1416526 + 77 127510935 Shew_R0029 - 11 Arg tRNA
1416580 1416656 + 77 127510935 Shew_R0030 - 11 Arg tRNA
1416665 1416756 + 92 127510935 Shew_R0031 - 08 Ser tRNA
1466990 1467345 - 356 127510935 Shew_R0032 - tmRNA
1547952 1548027 - 76 127510935 Shew_R0033 - 11 Arg tRNA
1665747 1665822 - 76 127510935 Shew_R0034 - 13 Val tRNA
1665861 1665936 - 76 127510935 Shew_R0035 - 13 Val tRNA
1665974 1666049 - 76 127510935 Shew_R0036 - 13 Val tRNA
1666088 1666163 - 76 127510935 Shew_R0037 - 13 Val tRNA
1666223 1666298 - 76 127510935 Shew_R0038 - 13 Val tRNA
1666333 1666408 - 76 127510935 Shew_R0039 - 13 Val tRNA
1668903 1668978 + 76 127510935 Shew_R0040 - 02 Ala tRNA
1669059 1669134 + 76 127510935 Shew_R0041 - 04 Glu tRNA
1669242 1669317 + 76 127510935 Shew_R0042 - 04 Glu tRNA
1669425 1669500 + 76 127510935 Shew_R0043 - 04 Glu tRNA
1669608 1669683 + 76 127510935 Shew_R0044 - 04 Glu tRNA
1669791 1669866 + 76 127510935 Shew_R0045 - 04 Glu tRNA
1669974 1670049 + 76 127510935 Shew_R0046 - 04 Glu tRNA
1670171 1670246 + 76 127510935 Shew_R0047 - 04 Glu tRNA
1670321 1670396 + 76 127510935 Shew_R0048 - 02 Ala tRNA
1695147 1695223 - 77 127510935 Shew_R0049 - 03 Pro tRNA
1752885 1752960 + 76 127510935 Shew_R0050 - 10 Lys tRNA
1752999 1753074 + 76 127510935 Shew_R0051 - 10 Lys tRNA
1753113 1753188 + 76 127510935 Shew_R0052 - 10 Lys tRNA
1753363 1753438 + 76 127510935 Shew_R0053 - 10 Lys tRNA
1753613 1753688 + 76 127510935 Shew_R0054 - 10 Lys tRNA
1753864 1753939 + 76 127510935 Shew_R0055 - 10 Lys tRNA
1753979 1754054 + 76 127510935 Shew_R0056 - 10 Lys tRNA
2082317 2082393 - 77 127510935 Shew_R0057 - 16 Met tRNA
2082440 2082516 - 77 127510935 Shew_R0058 - 16 Met tRNA
2082564 2082640 - 77 127510935 Shew_R0059 - 16 Met tRNA
2082688 2082764 - 77 127510935 Shew_R0060 - 16 Met tRNA
2102518 2102593 + 76 127510935 Shew_R0061 - 01 Gly tRNA
2102606 2102679 + 74 127510935 Shew_R0062 - 19 Cys tRNA
2102719 2102805 + 87 127510935 Shew_R0063 - 15 Leu tRNA
2229890 2229977 + 88 127510935 Shew_R0064 - 08 Ser tRNA
2311927 2312013 - 87 127510935 Shew_R0065 - 15 Leu tRNA
2312052 2312125 - 74 127510935 Shew_R0066 - 19 Cys tRNA
2312161 2312236 - 76 127510935 Shew_R0067 - 01 Gly tRNA
2327622 2327712 - 91 127510935 Shew_R0068 - 08 Ser tRNA
2350595 2350671 + 77 127510935 Shew_R0069 - 13 Val tRNA
2350692 2350768 + 77 127510935 Shew_R0070 - 13 Val tRNA
2378777 2378861 + 85 127510935 Shew_R0071 - 18 Tyr tRNA
2378893 2378977 + 85 127510935 Shew_R0072 - 18 Tyr tRNA
2379018 2379102 + 85 127510935 Shew_R0073 - 18 Tyr tRNA
2385603 2385678 + 76 127510935 Shew_R0074 - 07 Asn tRNA
2385721 2385796 + 76 127510935 Shew_R0075 - 07 Asn tRNA
2385823 2385898 + 76 127510935 Shew_R0076 - 07 Asn tRNA
2385923 2385998 + 76 127510935 Shew_R0077 - 07 Asn tRNA
2445114 2445202 - 89 127510935 Shew_R0078 - Xaa tRNA
2445296 2445372 - 77 127510935 Shew_R0079 - 06 Asp tRNA
2445422 2445498 - 77 127510935 Shew_R0080 - 06 Asp tRNA
2751361 2751492 - 132 127510935 Shew_R0081 - 5S ribosomal RNA
2751726 2754618 - 2893 127510935 Shew_R0082 - 23S ribosomal RNA
2754864 2754939 - 76 127510935 Shew_R0083 - 02 Ala tRNA
2755054 2755130 - 77 127510935 Shew_R0084 - 14 Ile tRNA
2755324 2756880 - 1557 127510935 Shew_R0085 - 16S ribosomal RNA
2928131 2928247 - 117 127510935 Shew_R0086 - SRP RNA; RNA component of signal recognition particle
2953121 2953196 - 76 127510935 Shew_R0087 - 09 His tRNA
2953205 2953281 - 77 127510935 Shew_R0088 - 11 Arg tRNA
2953345 2953421 - 77 127510935 Shew_R0089 - 03 Pro tRNA
3110419 3110571 - 153 127510935 Shew_R0090 -
3354950 3355026 - 77 127510935 Shew_R0091 - 16 Met tRNA
3355130 3355215 - 86 127510935 Shew_R0092 - 15 Leu tRNA
3456504 3456588 - 85 127510935 Shew_R0093 - 15 Leu tRNA
3456643 3456717 - 75 127510935 Shew_R0094 - 05 Gln tRNA
3456763 3456847 - 85 127510935 Shew_R0095 - 15 Leu tRNA
3456980 3457056 - 77 127510935 Shew_R0096 - 16 Met tRNA
3457077 3457151 - 75 127510935 Shew_R0097 - 05 Gln tRNA
3457177 3457251 - 75 127510935 Shew_R0098 - 05 Gln tRNA
3457300 3457384 - 85 127510935 Shew_R0099 - 15 Leu tRNA
3457454 3457530 - 77 127510935 Shew_R0100 - 16 Met tRNA
3483012 3483088 - 77 127510935 Shew_R0101 - 20 Trp tRNA
3484324 3484444 - 121 127510935 Shew_R0102 - 5S ribosomal RNA
3484613 3487505 - 2893 127510935 Shew_R0103 - 23S ribosomal RNA
3487746 3489302 - 1557 127510935 Shew_R0104 - 16S ribosomal RNA
3497824 3497899 + 76 127510935 Shew_R0105 - 17 Phe tRNA
3884270 3884356 - 87 127510935 Shew_R0107 - 15 Leu tRNA
3884408 3884492 - 85 127510935 Shew_R0108 - 15 Leu tRNA
4112264 4112384 - 121 127510935 Shew_R0109 - 5S ribosomal RNA
4112494 4115386 - 2893 127510935 Shew_R0110 - 23S ribosomal RNA
4115627 4117183 - 1557 127510935 Shew_R0111 - 16S ribosomal RNA
4118817 4118937 - 121 127510935 Shew_R0112 - 5S ribosomal RNA
4118943 4119018 - 76 127510935 Shew_R0113 - 12 Thr tRNA
4119098 4119229 - 132 127510935 Shew_R0114 - 5S ribosomal RNA
4119331 4122223 - 2893 127510935 Shew_R0115 - 23S ribosomal RNA
4122468 4122543 - 76 127510935 Shew_R0116 - 02 Ala tRNA
4122658 4122734 - 77 127510935 Shew_R0117 - 14 Ile tRNA
4122843 4124399 - 1557 127510935 Shew_R0118 - 16S ribosomal RNA
4434579 4434655 - 77 127510935 Shew_R0119 - 06 Asp tRNA
4434691 4434811 - 121 127510935 Shew_R0120 - 5S ribosomal RNA
4434911 4437803 - 2893 127510935 Shew_R0121 - 23S ribosomal RNA
4438044 4439600 - 1557 127510935 Shew_R0122 - 16S ribosomal RNA
4535054 4535174 - 121 127510935 Shew_R0123 - 5S ribosomal RNA
4535274 4538166 - 2893 127510935 Shew_R0124 - 23S ribosomal RNA
4538407 4539962 - 1556 127510935 Shew_R0125 - 16S ribosomal RNA