Материалы:NC 009617

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   LOCUS       NC_009617            6000632 bp    DNA     circular BCT 29-JUN-2007
   DEFINITION  Clostridium beijerinckii NCIMB 8052, complete genome.
   ACCESSION   NC_009617
   VERSION     NC_009617.1  GI:150014892
   KEYWORDS    .
   SOURCE      Clostridium beijerinckii NCIMB 8052
     ORGANISM  Clostridium beijerinckii NCIMB 8052
               Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
               Clostridium.
   REFERENCE   1  (bases 1 to 6000632)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Tapia,R., Brainard,J., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N.,
               Bennet,G., Cann,I., Chen,J.-S., Contreras,A.L., Jones,D.,
               Kashket,E., Mitchell,W., Stoddard,S., Schwarz,W., Qureshi,N.,
               Young,M., Shi,Z., Ezeji,T., White,B., Blaschek,H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Clostridium beijerinckii NCIMB 8052
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 6000632)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-JUN-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 6000632)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina
               del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,
               Sims,D., Brettin,T., Bruce,D., Tapia,R., Brainard,J., Schmutz,J.,
               Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N.,
               Bennet,G., Cann,I., Chen,J.-S., Contreras,A.L., Jones,D.,
               Kashket,E., Mitchell,W., Stoddard,S., Schwarz,W., Qureshi,N.,
               Young,M., Shi,Z., Ezeji,T., White,B., Blaschek,H. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (06-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000721.
               URL -- http://www.jgi.doe.gov
               JGI Project ID:  3634512
               Source DNA and bacteria available from Hans Blaschek
               (blaschek@uiuc.edu)
               Bacteria available from NCIMB: NCIMB 8052
               Contacts: Hans Blaschek (blaschek@uiuc.edu)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.


Расположение РНК[править]

Начало Конец Направление Длина PID Ген COG Комментарий
9623 11127 + 1505 150014892 Cbei_R0001 - 16S ribosomal RNA
11348 14256 + 2909 150014892 Cbei_R0002 - 23S ribosomal RNA
14369 14484 + 116 150014892 Cbei_R0003 - 5S ribosomal RNA
14528 14604 + 77 150014892 Cbei_R0004 - 16 Met tRNA
14606 14681 + 76 150014892 Cbei_R0005 - 02 Ala tRNA
17570 17660 + 91 150014892 Cbei_R0006 - 08 Ser tRNA
17691 17781 + 91 150014892 Cbei_R0007 - 08 Ser tRNA
18025 18115 + 91 150014892 Cbei_R0008 - 08 Ser tRNA
18134 18224 + 91 150014892 Cbei_R0009 - 08 Ser tRNA
29427 29501 + 75 150014892 Cbei_R0010 - 11 Arg tRNA
121863 121951 + 89 150014892 Cbei_R0011 - 15 Leu tRNA
121973 122048 + 76 150014892 Cbei_R0012 - 16 Met tRNA
122056 122132 + 77 150014892 Cbei_R0013 - 16 Met tRNA
122139 122227 + 89 150014892 Cbei_R0014 - 15 Leu tRNA
122249 122324 + 76 150014892 Cbei_R0015 - 16 Met tRNA
122332 122408 + 77 150014892 Cbei_R0016 - 16 Met tRNA
122415 122503 + 89 150014892 Cbei_R0017 - 15 Leu tRNA
122525 122600 + 76 150014892 Cbei_R0018 - 16 Met tRNA
122671 122759 + 89 150014892 Cbei_R0019 - 15 Leu tRNA
122781 122856 + 76 150014892 Cbei_R0020 - 16 Met tRNA
136705 136779 + 75 150014892 Cbei_R0021 - 07 Asn tRNA
137017 137091 + 75 150014892 Cbei_R0022 - 07 Asn tRNA
137531 137605 + 75 150014892 Cbei_R0023 - 07 Asn tRNA
142453 143957 + 1505 150014892 Cbei_R0024 - 16S ribosomal RNA
144098 144173 + 76 150014892 Cbei_R0025 - 02 Ala tRNA
144177 144253 + 77 150014892 Cbei_R0026 - 14 Ile tRNA
144366 147274 + 2909 150014892 Cbei_R0027 - 23S ribosomal RNA
147348 147463 + 116 150014892 Cbei_R0028 - 5S ribosomal RNA
147468 147543 + 76 150014892 Cbei_R0029 - 17 Phe tRNA
147548 147622 + 75 150014892 Cbei_R0030 - 19 Cys tRNA
174419 174494 + 76 150014892 Cbei_R0031 - 12 Thr tRNA
354960 355044 + 85 150014892 Cbei_R0032 - 15 Leu tRNA
355049 355123 + 75 150014892 Cbei_R0033 - 01 Gly tRNA
431481 431556 + 76 150014892 Cbei_R0034 - 03 Pro tRNA
431574 431647 + 74 150014892 Cbei_R0035 - 01 Gly tRNA
431798 431874 + 77 150014892 Cbei_R0036 - 11 Arg tRNA
431881 431956 + 76 150014892 Cbei_R0037 - 03 Pro tRNA
431973 432046 + 74 150014892 Cbei_R0038 - 01 Gly tRNA
432082 432158 + 77 150014892 Cbei_R0039 - 11 Arg tRNA
432164 432239 + 76 150014892 Cbei_R0040 - 09 His tRNA
432243 432317 + 75 150014892 Cbei_R0041 - 05 Gln tRNA
432325 432400 + 76 150014892 Cbei_R0042 - 10 Lys tRNA
432418 432502 + 85 150014892 Cbei_R0043 - 15 Leu tRNA
432508 432582 + 75 150014892 Cbei_R0044 - 01 Gly tRNA
432606 432679 + 74 150014892 Cbei_R0045 - 01 Gly tRNA
432685 432760 + 76 150014892 Cbei_R0046 - 10 Lys tRNA
432818 432892 + 75 150014892 Cbei_R0047 - 05 Gln tRNA
432900 432975 + 76 150014892 Cbei_R0048 - 10 Lys tRNA
432995 433079 + 85 150014892 Cbei_R0049 - 15 Leu tRNA
433085 433159 + 75 150014892 Cbei_R0050 - 01 Gly tRNA
433183 433256 + 74 150014892 Cbei_R0051 - 01 Gly tRNA
433303 433379 + 77 150014892 Cbei_R0052 - 11 Arg tRNA
446133 447637 + 1505 150014892 Cbei_R0053 - 16S ribosomal RNA
447774 447850 + 77 150014892 Cbei_R0054 - 14 Ile tRNA
447938 450846 + 2909 150014892 Cbei_R0055 - 23S ribosomal RNA
450919 450993 + 75 150014892 Cbei_R0056 - 07 Asn tRNA
515496 515580 + 85 150014892 Cbei_R0057 - 18 Tyr tRNA
515590 515665 + 76 150014892 Cbei_R0058 - 13 Val tRNA
515693 515767 + 75 150014892 Cbei_R0059 - 12 Thr tRNA
515780 515864 + 85 150014892 Cbei_R0060 - 18 Tyr tRNA
515874 515949 + 76 150014892 Cbei_R0061 - 13 Val tRNA
515980 516054 + 75 150014892 Cbei_R0062 - 12 Thr tRNA
516067 516151 + 85 150014892 Cbei_R0063 - 18 Tyr tRNA
568733 568807 + 75 150014892 Cbei_R0064 - 20 Trp tRNA
570814 570888 + 75 150014892 Cbei_R0065 - 20 Trp tRNA
805096 805452 + 357 150014892 Cbei_R0066 - tmRNA
924919 926423 + 1505 150014892 Cbei_R0067 - 16S ribosomal RNA
926564 926639 + 76 150014892 Cbei_R0068 - 02 Ala tRNA
926762 929670 + 2909 150014892 Cbei_R0069 - 23S ribosomal RNA
929807 929922 + 116 150014892 Cbei_R0070 - 5S ribosomal RNA
973865 973950 + 86 150014892 Cbei_R0071 - 15 Leu tRNA
1039601 1039892 + 292 150014892 Cbei_R0072 - RNAseP RNA
1735288 1735363 + 76 150014892 Cbei_R0073 - 09 His tRNA
1735367 1735441 + 75 150014892 Cbei_R0074 - 05 Gln tRNA
1735448 1735523 + 76 150014892 Cbei_R0075 - 10 Lys tRNA
1765271 1765357 - 87 150014892 Cbei_R0076 - 15 Leu tRNA
2031255 2032759 + 1505 150014892 Cbei_R0077 - 16S ribosomal RNA
2033276 2036186 + 2911 150014892 Cbei_R0078 - 23S ribosomal RNA
2036440 2036555 + 116 150014892 Cbei_R0079 - 5S ribosomal RNA
2220562 2220662 - 101 150014892 Cbei_R0080 - SRP RNA; RNA component of signal recognition particle
2254715 2256219 + 1505 150014892 Cbei_R0081 - 16S ribosomal RNA
2256566 2259476 + 2911 150014892 Cbei_R0082 - 23S ribosomal RNA
2259548 2259622 + 75 150014892 Cbei_R0083 - 07 Asn tRNA
2259628 2259743 + 116 150014892 Cbei_R0084 - 5S ribosomal RNA
2266370 2267874 + 1505 150014892 Cbei_R0085 - 16S ribosomal RNA
2268095 2271006 + 2912 150014892 Cbei_R0086 - 23S ribosomal RNA
2271078 2271152 + 75 150014892 Cbei_R0087 - 07 Asn tRNA
2271158 2271273 + 116 150014892 Cbei_R0088 - 5S ribosomal RNA
2672602 2672676 - 75 150014892 Cbei_R0089 - 04 Glu tRNA
3398860 3398934 - 75 150014892 Cbei_R0090 - 04 Glu tRNA
3398954 3399028 - 75 150014892 Cbei_R0091 - 12 Thr tRNA
3399044 3399120 - 77 150014892 Cbei_R0092 - 06 Asp tRNA
3399127 3399202 - 76 150014892 Cbei_R0093 - 17 Phe tRNA
3399207 3399322 - 116 150014892 Cbei_R0094 - 5S ribosomal RNA
3399464 3402373 - 2910 150014892 Cbei_R0095 - 23S ribosomal RNA
3402720 3404224 - 1505 150014892 Cbei_R0096 - 16S ribosomal RNA
3549338 3549425 - 88 150014892 Cbei_R0097 - 14 Ile tRNA
3958886 3958961 - 76 150014892 Cbei_R0098 - 10 Lys tRNA
3959040 3959115 - 76 150014892 Cbei_R0099 - 09 His tRNA
3959122 3959198 - 77 150014892 Cbei_R0100 - 11 Arg tRNA
3959234 3959307 - 74 150014892 Cbei_R0101 - 01 Gly tRNA
4542982 4543097 - 116 150014892 Cbei_R0102 - 5S ribosomal RNA
4543173 4546085 - 2913 150014892 Cbei_R0103 - 23S ribosomal RNA
4546432 4547936 - 1505 150014892 Cbei_R0104 - 16S ribosomal RNA
5724399 5724474 + 76 150014892 Cbei_R0105 - 03 Pro tRNA
5728021 5728096 - 76 150014892 Cbei_R0106 - 17 Phe tRNA
5728101 5728216 - 116 150014892 Cbei_R0107 - 5S ribosomal RNA
5737922 5737997 - 76 150014892 Cbei_R0108 - 02 Ala tRNA
5737999 5738075 - 77 150014892 Cbei_R0109 - 16 Met tRNA
5738119 5738234 - 116 150014892 Cbei_R0110 - 5S ribosomal RNA
5738310 5741220 - 2911 150014892 Cbei_R0111 - 23S ribosomal RNA
5741441 5742945 - 1505 150014892 Cbei_R0112 - 16S ribosomal RNA
5745497 5745572 - 76 150014892 Cbei_R0113 - 10 Lys tRNA
5745577 5745692 - 116 150014892 Cbei_R0114 - 5S ribosomal RNA
5747092 5747167 - 76 150014892 Cbei_R0115 - 10 Lys tRNA
5747174 5747289 - 116 150014892 Cbei_R0116 - 5S ribosomal RNA
5747365 5750273 - 2909 150014892 Cbei_R0117 - 23S ribosomal RNA
5750494 5751998 - 1505 150014892 Cbei_R0118 - 16S ribosomal RNA
5764406 5764521 - 116 150014892 Cbei_R0119 - 5S ribosomal RNA
5764658 5767566 - 2909 150014892 Cbei_R0120 - 23S ribosomal RNA
5767787 5769291 - 1505 150014892 Cbei_R0121 - 16S ribosomal RNA
5770404 5770519 - 116 150014892 Cbei_R0122 - 5S ribosomal RNA
5770595 5773503 - 2909 150014892 Cbei_R0123 - 23S ribosomal RNA
5773724 5775228 - 1505 150014892 Cbei_R0124 - 16S ribosomal RNA
5829413 5829513 - 101 150014892 Cbei_R0125 - SRP RNA; RNA component of signal recognition particle
5886417 5886506 - 90 150014892 Cbei_R0126 - 08 Ser tRNA
5911068 5911142 - 75 150014892 Cbei_R0127 - 11 Arg tRNA
5928131 5928246 - 116 150014892 Cbei_R0128 - 5S ribosomal RNA
5928322 5931233 - 2912 150014892 Cbei_R0129 - 23S ribosomal RNA
5931454 5932958 - 1505 150014892 Cbei_R0130 - 16S ribosomal RNA
5967624 5967700 - 77 150014892 Cbei_R0131 - 06 Asp tRNA
5967707 5967782 - 76 150014892 Cbei_R0132 - 13 Val tRNA
5967799 5967873 - 75 150014892 Cbei_R0133 - 04 Glu tRNA
5967903 5967977 - 75 150014892 Cbei_R0134 - 12 Thr tRNA
5967988 5968064 - 77 150014892 Cbei_R0135 - 06 Asp tRNA
5968071 5968146 - 76 150014892 Cbei_R0136 - 13 Val tRNA
5968162 5968236 - 75 150014892 Cbei_R0137 - 04 Glu tRNA
5968266 5968340 - 75 150014892 Cbei_R0138 - 12 Thr tRNA
5968351 5968427 - 77 150014892 Cbei_R0139 - 06 Asp tRNA
5968434 5968509 - 76 150014892 Cbei_R0140 - 13 Val tRNA
5968526 5968600 - 75 150014892 Cbei_R0141 - 04 Glu tRNA

Ссылки[править]