Материалы:NC 009654

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Эта статья — часть материалов: лаборатории Биоинформатика, исследовательского проекта «Геном прокариот»

   LOCUS       NC_009654            5100344 bp    DNA     circular BCT 25-JUL-2007
   DEFINITION  Marinomonas sp. MWYL1, complete genome.
   ACCESSION   NC_009654
   VERSION     NC_009654.1  GI:152994043
   KEYWORDS    .
   SOURCE      Marinomonas sp. MWYL1
     ORGANISM  Marinomonas sp. MWYL1
               Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales;
               Marinomonas.
   REFERENCE   1  (bases 1 to 5100344)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Johnston,A.W.B., Todd,J.D., Rogers,R.,
               Wexler,M., Bond,P.L., Li,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Complete sequence of Marinomonas sp. MWYL1
     JOURNAL   Unpublished
   REFERENCE   2  (bases 1 to 5100344)
     AUTHORS   Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T.,
               Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D.,
               Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L.,
               Kyrpides,N., Kim,E., Johnston,A.W.B., Todd,J.D., Rogers,R.,
               Wexler,M., Bond,P.L., Li,Y. and Richardson,P.
     CONSRTM   US DOE Joint Genome Institute
     TITLE     Direct Submission
     JOURNAL   Submitted (27-JUN-2007) US DOE Joint Genome Institute, 2800
               Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
   REFERENCE   3  (bases 1 to 5100344)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (30-NOV-2006) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000749.
               URL -- http://www.jgi.doe.gov
               JGI Project ID: 4002558
               Source DNA and bacteria available from Andrew W.B. Johnston
               (a.johnston@uea.ac.uk)
               Contacts: Andrew W.B. Johnston (a.johnston@uea.ac.uk)
                         Paul Richardson (microbes@cuba.jgi-psf.org)
               Quality assurance done by JGI-Stanford
               Annotation done by JGI-ORNL and JGI-PGF
               Finishing done by JGI-LANL
               Finished microbial genomes have been curated to close all gaps with
               greater than 98% coverage of at least two independent clones. Each
               base pair has a minimum q (quality) value of 30 and the total error
               rate is less than one per 50000.
               The JGI and collaborators endorse the principles for the
               distribution and use of large scale sequencing data adopted by the
               larger genome sequencing community and urge users of this data to
               follow them. It is our intention to publish the work of this
               project in a timely fashion and we welcome collaborative
               interaction on the project and analysis.
               (http://www.genome.gov/page.cfm?pageID=10506376).
               COMPLETENESS: full length.

Расположение РНК

Начало	Конец	Направление	Длина	PID	Ген	COG	Комментарий
618906	618981	+	76	152994043	Mmwyl1_R0001	-	^{17 Phe tRNA}
619081	619156	+	76	152994043	Mmwyl1_R0002	-	^{17 Phe tRNA}
1074351	1074427	+	77	152994043	Mmwyl1_R0003	-	^{16 Met tRNA}
1141526	1141611	+	86	152994043	Mmwyl1_R0004	-	^{15 Leu tRNA}
1183613	1183688	-	76	152994043	Mmwyl1_R0005	-	^{11 Arg tRNA}
1190886	1192417	+	1532	152994043	Mmwyl1_R0006	-	16S ribosomal RNA
1192523	1192599	+	77	152994043	Mmwyl1_R0007	-	^{14 Ile tRNA}
1192620	1192695	+	76	152994043	Mmwyl1_R0008	-	^{02 Ala tRNA}
1193004	1195901	+	2898	152994043	Mmwyl1_R0009	-	23S ribosomal RNA
1196114	1196227	+	114	152994043	Mmwyl1_R0010	-	5S ribosomal RNA
1485412	1486943	+	1532	152994043	Mmwyl1_R0011	-	16S ribosomal RNA
1487049	1487125	+	77	152994043	Mmwyl1_R0012	-	^{14 Ile tRNA}
1487146	1487221	+	76	152994043	Mmwyl1_R0013	-	^{02 Ala tRNA}
1487530	1490427	+	2898	152994043	Mmwyl1_R0014	-	23S ribosomal RNA
1490621	1490734	+	114	152994043	Mmwyl1_R0015	-	5S ribosomal RNA
1943445	1943521	+	77	152994043	Mmwyl1_R0016	-	^{11 Arg tRNA}
1949982	1950058	+	77	152994043	Mmwyl1_R0017	-	^{06 Asp tRNA}
2099269	2099345	+	77	152994043	Mmwyl1_R0018	-	^{16 Met tRNA}
2099446	2099522	+	77	152994043	Mmwyl1_R0019	-	^{16 Met tRNA}
2099573	2099649	+	77	152994043	Mmwyl1_R0020	-	^{16 Met tRNA}
2099700	2099776	+	77	152994043	Mmwyl1_R0021	-	^{16 Met tRNA}
2099827	2099903	+	77	152994043	Mmwyl1_R0022	-	^{16 Met tRNA}
2100004	2100080	+	77	152994043	Mmwyl1_R0023	-	^{16 Met tRNA}
2474439	2474514	+	76	152994043	Mmwyl1_R0024	-	^{10 Lys tRNA}
2474544	2474619	+	76	152994043	Mmwyl1_R0025	-	^{10 Lys tRNA}
2478015	2478102	+	88	152994043	Mmwyl1_R0026	-	^{08 Ser tRNA}
2550515	2550590	-	76	152994043	Mmwyl1_R0027	-	^{04 Glu tRNA}
2550618	2550692	-	75	152994043	Mmwyl1_R0028	-	^{01 Gly tRNA}
2550748	2550823	-	76	152994043	Mmwyl1_R0029	-	^{04 Glu tRNA}
2550889	2550964	-	76	152994043	Mmwyl1_R0030	-	^{04 Glu tRNA}
2551025	2551099	-	75	152994043	Mmwyl1_R0031	-	^{01 Gly tRNA}
2551183	2551258	-	76	152994043	Mmwyl1_R0032	-	^{04 Glu tRNA}
2551319	2551393	-	75	152994043	Mmwyl1_R0033	-	^{01 Gly tRNA}
2551477	2551552	-	76	152994043	Mmwyl1_R0034	-	^{04 Glu tRNA}
2551613	2551687	-	75	152994043	Mmwyl1_R0035	-	^{01 Gly tRNA}
2551771	2551846	-	76	152994043	Mmwyl1_R0036	-	^{04 Glu tRNA}
2551907	2551981	-	75	152994043	Mmwyl1_R0037	-	^{01 Gly tRNA}
2552042	2552117	-	76	152994043	Mmwyl1_R0038	-	^{04 Glu tRNA}
2630183	2630297	-	115	152994043	Mmwyl1_R0039	-	5S ribosomal RNA
2630383	2630496	-	114	152994043	Mmwyl1_R0040	-	5S ribosomal RNA
2630690	2633587	-	2898	152994043	Mmwyl1_R0041	-	23S ribosomal RNA
2634032	2635563	-	1532	152994043	Mmwyl1_R0042	-	16S ribosomal RNA
2683321	2683405	+	85	152994043	Mmwyl1_R0043	-	^{15 Leu tRNA}
2735359	2735475	-	117	152994043	Mmwyl1_R0044	-	SRP RNA; RNA component of signal recognition particle
2867288	2867363	-	76	152994043	Mmwyl1_R0045	-	^{13 Val tRNA}
2867521	2867597	-	77	152994043	Mmwyl1_R0046	-	^{06 Asp tRNA}
2930240	2930315	-	76	152994043	Mmwyl1_R0047	-	^{13 Val tRNA}
2930374	2930450	-	77	152994043	Mmwyl1_R0048	-	^{06 Asp tRNA}
2930502	2930577	-	76	152994043	Mmwyl1_R0049	-	^{13 Val tRNA}
2930636	2930712	-	77	152994043	Mmwyl1_R0050	-	^{06 Asp tRNA}
2930764	2930839	-	76	152994043	Mmwyl1_R0051	-	^{13 Val tRNA}
2930898	2930974	-	77	152994043	Mmwyl1_R0052	-	^{06 Asp tRNA}
2931026	2931101	-	76	152994043	Mmwyl1_R0053	-	^{13 Val tRNA}
2931160	2931236	-	77	152994043	Mmwyl1_R0054	-	^{06 Asp tRNA}
2931288	2931363	-	76	152994043	Mmwyl1_R0055	-	^{13 Val tRNA}
2931475	2931550	-	76	152994043	Mmwyl1_R0056	-	^{12 Thr tRNA}
2931596	2931671	-	76	152994043	Mmwyl1_R0057	-	^{12 Thr tRNA}
2931712	2931787	-	76	152994043	Mmwyl1_R0058	-	^{12 Thr tRNA}
2931859	2931934	-	76	152994043	Mmwyl1_R0059	-	^{12 Thr tRNA}
2931948	2932024	-	77	152994043	Mmwyl1_R0060	-	^{03 Pro tRNA}
2967321	2967615	-	295	152994043	Mmwyl1_R0061	-	RNA component of RNaseP
2994078	2994162	+	85	152994043	Mmwyl1_R0062	-	^{15 Leu tRNA}
3646166	3646242	-	77	152994043	Mmwyl1_R0063	-	^{13 Val tRNA}
3669720	3669795	-	76	152994043	Mmwyl1_R0064	-	^{02 Ala tRNA}
3669869	3669944	-	76	152994043	Mmwyl1_R0065	-	^{02 Ala tRNA}
3671436	3671520	+	85	152994043	Mmwyl1_R0066	-	^{15 Leu tRNA}
3675474	3675559	-	86	152994043	Mmwyl1_R0067	-	^{15 Leu tRNA}
3675571	3675644	-	74	152994043	Mmwyl1_R0068	-	^{19 Cys tRNA}
3675668	3675742	-	75	152994043	Mmwyl1_R0069	-	^{01 Gly tRNA}
4071793	4071867	+	75	152994043	Mmwyl1_R0070	-	^{05 Gln tRNA}
4071878	4071954	+	77	152994043	Mmwyl1_R0071	-	^{16 Met tRNA}
4071965	4072039	+	75	152994043	Mmwyl1_R0072	-	^{05 Gln tRNA}
4072073	4072149	+	77	152994043	Mmwyl1_R0073	-	^{16 Met tRNA}
4072172	4072246	+	75	152994043	Mmwyl1_R0074	-	^{05 Gln tRNA}
4087220	4087333	-	114	152994043	Mmwyl1_R0075	-	5S ribosomal RNA
4087547	4090444	-	2898	152994043	Mmwyl1_R0076	-	23S ribosomal RNA
4090766	4092297	-	1532	152994043	Mmwyl1_R0077	-	16S ribosomal RNA
4097247	4097323	-	77	152994043	Mmwyl1_R0078	-	^{11 Arg tRNA}
4097387	4097463	-	77	152994043	Mmwyl1_R0079	-	^{11 Arg tRNA}
4097525	4097601	-	77	152994043	Mmwyl1_R0080	-	^{11 Arg tRNA}
4097664	4097753	-	90	152994043	Mmwyl1_R0081	-	^{08 Ser tRNA}
4123727	4123803	-	77	152994043	Mmwyl1_R0082	-	^{11 Arg tRNA}
4266717	4266800	+	84	152994043	Mmwyl1_R0083	-	^{18 Tyr tRNA}
4267470	4267545	-	76	152994043	Mmwyl1_R0084	-	^{10 Lys tRNA}
4267574	4267650	-	77	152994043	Mmwyl1_R0085	-	^{03 Pro tRNA}
4267652	4267727	-	76	152994043	Mmwyl1_R0086	-	^{07 Asn tRNA}
4267761	4267836	-	76	152994043	Mmwyl1_R0087	-	^{10 Lys tRNA}
4267850	4267925	-	76	152994043	Mmwyl1_R0088	-	^{09 His tRNA}
4267954	4268030	-	77	152994043	Mmwyl1_R0089	-	^{03 Pro tRNA}
4268032	4268107	-	76	152994043	Mmwyl1_R0090	-	^{07 Asn tRNA}
4268149	4268239	-	91	152994043	Mmwyl1_R0091	-	^{08 Ser tRNA}
4479688	4480048	+	361	152994043	Mmwyl1_R0092	-	tmRNA
4514930	4515043	-	114	152994043	Mmwyl1_R0093	-	5S ribosomal RNA
4515234	4518131	-	2898	152994043	Mmwyl1_R0094	-	23S ribosomal RNA
4518440	4518515	-	76	152994043	Mmwyl1_R0095	-	^{02 Ala tRNA}
4518536	4518612	-	77	152994043	Mmwyl1_R0096	-	^{14 Ile tRNA}
4518718	4520249	-	1532	152994043	Mmwyl1_R0097	-	16S ribosomal RNA
4683716	4683829	-	114	152994043	Mmwyl1_R0098	-	5S ribosomal RNA
4684020	4686917	-	2898	152994043	Mmwyl1_R0099	-	23S ribosomal RNA
4687284	4688815	-	1532	152994043	Mmwyl1_R0100	-	16S ribosomal RNA
4793295	4793408	-	114	152994043	Mmwyl1_R0101	-	5S ribosomal RNA
4793622	4796519	-	2898	152994043	Mmwyl1_R0102	-	23S ribosomal RNA
4796886	4798417	-	1532	152994043	Mmwyl1_R0103	-	16S ribosomal RNA
4855797	4855872	-	76	152994043	Mmwyl1_R0104	-	^{20 Trp tRNA}
4855989	4856064	-	76	152994043	Mmwyl1_R0105	-	^{12 Thr tRNA}
4856066	4856140	-	75	152994043	Mmwyl1_R0106	-	^{01 Gly tRNA}
4856144	4856227	-	84	152994043	Mmwyl1_R0107	-	^{18 Tyr tRNA}
4876749	4876862	-	114	152994043	Mmwyl1_R0108	-	5S ribosomal RNA
4877052	4879949	-	2898	152994043	Mmwyl1_R0109	-	23S ribosomal RNA
4880316	4881847	-	1532	152994043	Mmwyl1_R0110	-	16S ribosomal RNA
4896975	4897059	-	85	152994043	Mmwyl1_R0111	-	^{15 Leu tRNA}